Name | Dr Dinesh Kumar |
Ongoing |
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Completed |
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dinesh[dot]kumar[at]icar[dot]gov[dot]in |
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Designation | Principal Scientist |
Awards |
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Articles | Kumar, Deepender, Kumar, Animesh, Chhokar, Vinod, Gangwar, O.P., Bhardwaj, S.C., Sivasamy, M, Sai Prasad, S.V., Sheoran, Sonia, Singh, Rajender, Sharma, Pradeep, Iquebal, M.A., Jaiswal, Sarika, Angadi, U.B., Singh, Gyanendra, Rai, Anil, Singh, G.P., Kumar, Dinesh, and Tiwari, Ratan (2020) Genome-wide association studies in diverse spring wheat panel for Stripe, Stem and Leaf rust resistance. Frontiers in Plant Science, (https://www.frontiersin.org/articles/10.3389/fpls.2020.00748/full)
Das, P., Joshi, C.G., Kushwaha, B., Kumar, D., Sahoo, L., Das, S.P., Bit, A., Shah, T.M., Hinsu, A.T., Patel, N., Patnaik, S., Agarwal, S., Pandey, M., Srivastava, S., Meher, P.K., Jayasankar, P, Koringa, P.G., Nagpure, N.S., Kumar, R., Singh, M., Iquebal, M.A., Jaiswal, S., Kumar, N., Raza, M., Mahapatra, K.D. and Jena, J.K. (2020). De novo assembly and genome-wide SNP discovery in rohu carp, Labeo rohita. Frontiers in Genetics. (https://www.frontiersin.org/articles/10.3389/fgene.2020.00386/full).
Jaiswal, Sarika, Gautam, R K., Singh, R K., Krishnamurthy S. L., Ali, S., Sakthivel, K., Iquebal, Mir A., Rai, Anil, Kumar, Dinesh (2019). Harmonizing technological advances in phenomics and genomics for enhanced salt tolerance in rice from a practical perspective. Rice Journal, 12, Article number: 89 (2019) (https://thericejournal.springeropen.com/articles/10.1186/s12284-019-0347-1)
Kumar, Deepender, Chhokar, Vinod, Singh, Rajender, Sheoran, Sonia, Sharma, Pradeep, Jaiswal, Sarika, Iquebal, M.A., Jaiswar, Akanksha, Jaisri, J, Angadi, U.B., Rai, Anil, Singh, G.P., Kumar, Dinesh, Tiwari, Ratan (2019). Characterization of genetic diversity and population structure in wheat using array based SNP markers. Molecular Biology Reports, 47, 293–306. https://link.springer.com/article/10.1007/s11033-019-05132-8
Iquebal, M.A., Sharma, Pradeep, Jaiswal, Sarika, Jasrotia, Rahul Singh, Kaur, Amandeep, Siroha, Monika, Angadi, U.B., Sheoran, Sonia, Singh Rajender, Singh, G.P., Rai, Anil, Tiwari, Ratan, Kumar, Dinesh (2019). RNAseq analysis reveals drought-responsive molecular pathways with candidate genes and putative molecular markers in root tissue of wheat. Scientific Reports (Nature Group of Journal), 9, Article number: 13917 (https://www.nature.com/articles/s41598-019-49915-2)
Ali, Abid, Kumar, Rakesh, Iquebal, Mir Asif, Jaiswal, Sarika, Kumar, Dinesh and khan, Asad (2019). Role of conserved residues in catalytic activity of NDM-1: an approach of site directed mutagenesis and molecular dynamics. Physical Chemistry Chemical Physics-a Journal of Royal Society of Chemistry, 21, 17821–17835 (https://pubs.rsc.org/en/content/articlelanding/2019/cp/c9cp02734c/unauth#!divAbstract)
Rasal, Kiran D., Iquebal, Mir Asif, Pandey, Amrendra, Behera, Parmeswari, Jaiswal, Sarika, Vasam, Manohar, Dixti, Sangita, Raza, Mustafa, Sahoo, L., Nandi, Samiran, Angadi, UB, Rai, Anil, Kumar, Dinesh, Nagpure, Naresh, Chaudhari, Aparna and Sundaray, Jitendra Kumar (2020) Revealing liver specific microRNAs linked with carbohydrate metabolism of farmed carp, Labeo rohita (Hamilton, 1822). Genomics, 112 (1), 32-44. (https://www.sciencedirect.com/science/article/pii/S088875431930237X?via%3Dihub).
Rasal, Kiran D., Iquebal, Mir Asif, Jaiswal, Sarika, Dixit, Sangita, Vasam, Manohar, Nandi, Samiran, Raza, Mustafa, Sahoo, Lakshman, Angadi, UB, Rai, Anil, Kumar, Dinesh, and Sundaray, Jitendra Kumar Sundaray (2019). Liver specific microRNAs identification in farmed carp, Labeo bata (Hamilton, 1822) fed with starch diet using high-throughput sequencing. Marine Biotechnology, 21, 589–595. (https://link.springer.com/article/10.1007/s10126-019-09912-y)
Jasrotia, Rahul Singh, Jaiswal, Sarika, Yadav, Pramod Kumar, Iquebal, Mir Asif, Rai, Anil and Kumar Dinesh (2019) Genome-wide analysis of HSP70 family protein in Vigna radiata and co-expression analysis under abiotic and biotic stress. Journal of Computational Biology. 26, 1-13. https://www.liebertpub.com/doi/abs/10.1089/cmb.2019.0166
Khan, Aamir, Johnson, George K, Jasrotia, Rahul Singh, Aravind, Sharon, Angadi, U. B., Iquebal, M.A., Manju KP, Jaiswal, Sarika, Umadevi P., Rai, Anil, Kumar, Dinesh (2020) Plant Virus Interaction Mechanism and Associated Pathways in Mosaic Disease of Green Cardamom (Elettaria cardamomum Maton) by RNA-Seq Approach. Genomics, 112 (2), 2041-2051. (https://www.sciencedirect.com/science/article/pii/S0888754319309218)
Jasrotia, Rahul Singh, Yadav, Pramod Kumar, Iquebal, Mir Asif, Bhatt, S.B., Arora, Vasu, Angadi, U.B., Tomar Rukam Singh, Jaiswal, Sarika, Rai, Anil, Kumar, Dinesh (2019). VigSatDB: Genome wide microsatellite DNA marker database of three species of Vigna for germplasm characterization and improvement. Database: The Journal of Biological Databases and Curation. 2019, 1-13. (https://academic.oup.com/database/article/doi/10.1093/database/baz055/5506750)
Sheoran, Sonia, Jaiswal Sarika, Kumar, Deepender, Raghav, Nishu, Sharma, Ruchika, Pawar, Sushma, Paul, Surinder, Iquebal, M.A., Jaiswar, Akanksha, Sharma, Pradeep, Singh, Rajender, Singh, CB Gupta, Arun, Kumar, Neeraj, Angadi, U.B., Rai, Anil, Singh, G.P., Kumar, Dinesh, Tiwari, Ratan (2019). Uncovering genomic regions associated with 36 agro-morphological traits in Indian spring wheat using GWAS. Frontiers in Plant Science, 10, Article 527. (https://www.frontiersin.org/articles/10.3389/fpls.2019.00527/full)
Singh, Rajender, Iquebal, MA, Mishra, CN, Jaiswal, Sarika, Kumar, Deepender, Raghav, Nishu, Paul, Surinder, Sheoran, Sonia, Sharma, Pradeep, Gupta, Arun, Tiwari, Vinod, Angadi, UB, Kumar, Neeraj, Rai, Anil, Singh, GP, Kumar, Dinesh and Tiwari, Ratan (2019) Development of model web-server for crop variety identification using throughput SNP genotyping data. Scientific Reports (Nature Group of Journal). https://www.nature.com/articles/s41598-019-41204-2
Jaiswal, Sarika, Iquebal, M.A., Arora, Vasu, Angadi, U.B., Khokar, R.S., Sharma, Pradeep, Sheoran, Sonia, Singh, G.P., Rai, Anil, Tiwari, Ratan, Kumar, Dinesh (2019). Development of species specific putative miRNA and its target prediction tool in wheat (Triticum aestivum L.). Scientific Reports, https://www.nature.com/articles/s41598-019-40333-y
Mukherjee, Sabyasachi, Mukherjee, Anupama, Singh, Rahul Jasrotia, Jaiswal, Sarika, Iquebal, Mir Asif, Longkumer, Imsusosang, Mech, Moonmoon, Vupru, Kezhavituo, Khate, Kobu, Rajkhowa, Chandan, Rai, Anil and Kumar, Dinesh (2019). Muscle transcriptome signature and gene regulatory network in two divergent lines of a semi-domesticated bovine Mithun (Bos frontalis). Genomics (Elsevier Journal), 112 (1), 252-262 (https://doi.org/10.1016/j.ygeno.2019.02.004)
Jaiswal, Sarika, Jadhav, Pravin V., Jasrotia, Rahul Singh, Kale, Prashant B., Kad, Snehal K., Moharil, Mangesh P., Dudhare, Mahendra S., Deshmukh, Amit G., Mane, Shyamsundar S., Nandanwar, Ravindra S., Penna, Suprasanna, Manjaya, Joy G., Iquebal, Mir Asif, Tomar, Rukam Singh, Rai, Anil, Kumar, Dinesh (2019). Transcriptomic signature reveals mechanism of flower bud distortion in witches’-broom disease of soybean (Glycine max). BMC Plant Biology, 19, Article number: 26. https://bmcplantbiol.biomedcentral.com/articles/10.1186/s12870-018-1601-1
Das, Ritwika, Arora, Vasu, Jaiswal, Sarika, Iquebal, MA, Angadi, UB, Singh, Rakesh, Shil, Sandip, Rai, Anil and Kumar Dinesh (2018). PolyMorphPredict: Web server for rapid polymorphic SSR locus discovery from whole genome and transcriptome data. Frontiers in Plant Sciences. https://www.frontiersin.org/articles/10.3389/fpls.2018.01966/full
Arora, Vasu, Kapoor, Neera, Fatma, Samar, Jaiswal, Sarika, Iquebal, Mir Asif, Rai, Anil and Kumar, Dinesh (2018). BanSatDB: Whole genome based database of putative and experimentally validated microsatellite markers of three Musa spp. Crop Journal, 18(6), 642-650. https://www.sciencedirect.com/science/article/pii/S2214514118300205
Jaiswal, Sarika, Antala, Tushar J., Kheni, Jashminkumar, Chopra, Meenu, Mandavia, M. K., Tomar, Rukam S., Jasrotia, Rahul Singh, Iquebal, M.A., Angadi, U.B., Rai, Anil, Kumar, Dinesh (2018) Transcriptomic signature of drought response in pearl millet (Pennisetum glaucum (L.) and development of web-genomic resources. Scientific Reports: 8, 3382 https://www.nature.com/articles/s41598-018-21560-1.
Jasrotia, Rahul Singh, Iquebal, Mir Asif, Yadav, Pramod Kumar, Kumar, Neeraj, Jaiswal, Sarika, Angadi, Ulavappa B., Rai, Anil, Kumar, Dinesh (2017). Development of transcriptome based web genomic resources of yellow mosaic disease in Vigna mungo. Physiology and Molecular Biology of Plants, 23(4), 767-777. (https://link.springer.com/article/10.1007/s12298-017-0470-7) Iquebal, Mir A, Jaiswal, Sarika, Mahato, Ajay K, Jayaswal, Pawan K, Angadi, U.B., Kumar, Neeraj, Sharma, Nimisha, Singh, Anand, Srivastav, Manish, Praksh, Jai, Singh, Sanjay K, Khan, Kasim, Mishra, Rupesh K, Rajan, Shailendra, Bajpai, Anju, Sandhya, BS, Nischita, Puttaraju, Ravishankar, KV, Dinesh, MR, Rai, Anil, Kumar, Dinesh, Sharma, Tilak R., Singh, Nagendra K. (2017). MiSNPDb: a web based genomic resources of tropical ecology fruit mango (Mangifera indica L.) for phylogeography and varietal differentiation. Scientific Reports, 7, 14968 (2017) https://www.nature.com/articles/s41598-017-14998-2
Jaiswal, Sarika, Sheoran, Sonia, Arora, Vasu, Angadi, U.B., Iquebal, M.A., Raghav, Nishu, Aneja, Bharti, Kumar Deepender, Khokar, R.S., Sharma, Pradeep, Singh, G.P., Rai, Anil, Tiwari, Ratan, Kumar, Dinesh. (2017). Putative Microsatellite DNA Marker-Based Wheat Genomic Resource for Varietal Improvement and Management. Frontiers in Plant Sciences. https://www.frontiersin.org/articles/10.3389/fpls.2017.02009/full
Iquebal, Mir A., Tomar, Rukam Singh, Parakhia, M.V., Singla, Deepak, Jaiswal, Sarika, Rathod, V.M., Padhiyar, S.M., Kumar, Neeraj, Rai, Anil, and Kumar, Dinesh. (2017) Draft whole genome sequence of groundnut stem rot fungus Athelia rolfsii revealing genetic architect of its pathogenicity and virulence. Scientific Reports, 7, 5299 (2017) (https://www.nature.com/articles/s41598-017-05478-8)
Verma, Sandeep Kumar, Jasrotia, Rahul Singh, Iquebal, M.A., Jaiswal, Sarika, Angadi, U.B., Rai, Anil and Kumar, Dinesh (2017). Deciphering genes associated with root wilt disease of coconut and development of its transcriptomic database (CnTDB). Physiological and Molecular Plant Pathology. 100, 255-267. http://www.sciencedirect.com/science/article/pii/S0885576517300693
Sharma, Pradeep, Tiwari, Ratan, Saharan, M.S., Sharma, Indu, Kumar, Jitender, Mishra, Shefali, Muthusamy, Senthilkumar K., Gupta, R.K., Jaiswal, Sarika, Iquebal, Mir Asif, Angadi, U.B., Kumar, Neeraj, Fatma, Samar, Rai, Anil, Kumar, Dinesh (2016) Draft Genome Sequence of the Karnal Bunt fungus, Tilletia indica Mitra: Two monosporidial lines (PSWKBGH-1 and 2). Genome Announcement, 4(5):e00928-16. doi:10.1128/genomeA.00928-16.
Taxak, Pooja Choudhary, Malhotra, Suruchi M, Bharadwaj, C, Gaikwad, Kishor, Kaur, Sukhdeep, Chopra, Meenu, Tandon, Gitanjali, Jaiswal, Sarika, Iquebal, Mir A, Kumar, Dinesh, Srinivasan, Jain, Pradeep K. (2017). Transcriptomic signature of fusarium toxin in chickpea unveiling wilt pathways and marker discovery. Physiological and Molecular Plant Pathology, 100, 163-177.
Iquebal, Mir Asif, Soren, Khela Ram, Gangwar, Priyanka, Shanmugavadevel, P S, Aravind K, Singla, Deepak, Jaiswal, Jasrotia, Rahul Singh, Sarika, Chaturvedi, Sushil K, Singh, NP, Varshney, Rajeev K, Rai, Anil, Kumar, Dinesh (2017). Discovery of putative herbicide resistance genes and its regulatory network in chickpea using transcriptome sequencing. Frontiers in Plant Science, 8:958. doi: 10.3389/fpls.2017.00958 (https://www.frontiersin.org/articles/10.3389/fpls.2017.00958/full)
Gautam, Aditi, Sharma, Asuda, Sarika, Fatma, Samar, Arora, Vasu, Iquebal, M.A., Nandi, S., Sundaray, J.K., Jayasankar, J., Rai, Anil, Kumar, Dinesh (2016). Development of antimicrobial peptide prediction tool for aquaculture industries. Probiotics and Antimicrobial Proteins, 8 (3), 141-149. http://link.springer.com/article/10.1007%2Fs12602-016-9215-0 Shukla, Shantanu Shukla, Iquebal, MA, Jaiswal, Sarika, Angadi, UB, Fatma, Samar, Kumar, Neeraj, Jasrotia, Rahul S, Fatima, Yasmin, Rai, Anil, Kumar, Dinesh (2016) The Onion Genomic Resource: A Genomics and Bioinformatics driven resource for onion breeding. Plant Gene, 8: 9-15. http://www.sciencedirect.com/science/article/pii/S2352407316300166
Das, Sofia, Bit, Amrita, Patnaik, Siddhi, Sahoo, Lakshman, Meher, Prem, Saha, T., Patel, A., Patel, Namrata, Koringa, Prakash, Joshi, Chitanya, Agarwal, Suyash, Pandey, Manmohan, Srivastava, Shreya, Kushwaha, B., Kumar, Ravindra, Nagpure, Naresh, Iquebal, M.A., Jaiswal, Sarika, Kumar, Dinesh, Jayasankar, P., Jena, J., and Das, Paramananda (2015). Low depth shotgun sequencing resolves complete mitochondrial genome sequence of Labeo rohita. Mitochondrial DNA, 27(5), 3517-3518. http://informahealthcare.com/doi/abs/10.3109/19401736.2015.1074197 Kushwaha, B., Kumar, R., Agarwal, S., Pandey, M., Nagpure, N.S., Singh, M., Srivastava, S., Joshi, C.G., Das, P., Shah, T.M., Patel, A.B., Patel, N., Koringa, P, Das, S.P., Patnaik, S., Bit, A., Sarika, Iquebal, M.A., Kumar, D. and Jena, J.K. (2015). Assembly and variation analyses of C. batrachus mitogenome retrieved from WGS data and its phylogenetic relationship with other catfishes. Meta Gene, 5, 105-114.
Iquebal, M.A., Sarika, Angadi, U.B., Sablok, Gaurav, Arora, Vasu, Kumar, Sunil, Rai, Anil and Kumar, Dinesh (2015). SBMDb: First whole genome microsatellite DNA marker database of sugar beet for bioenergy and industrial applications. Database: The Journal of Biological Databases and Curation (http://database.oxfordjournals.org/content/2015/bav111)
Tandon, Gitanjali, Sarika, Iquebal, M.A., Kumar, Sunil, Kaur, Sukhdeep, Rai, Anil and Kumar, Dinesh. (2015). Evidence of Salicylic Acid pathway with EDS1 and PAD4 proteins by molecular dynamics simulation for Grape improvement. Journal of Biomolecular Structure and Dynamics, 33(10), 2180-2191 http://www.tandfonline.com/doi/full/10.1080/07391102.2014.996187
Sarika, Iquebal, MA, Arora, Vasu, Rai, Anil and Kumar Dinesh. (2015). Species specific approach for development of web-based antimicrobial peptides prediction tool. Computers and Electronics in Agriculture, 111, 55-61.
Iquebal, M.A., Muhammad Shahid, Sarika, S. P. Dixit, N. K. Verma, R. A. K. Aggarwal, S. Jayakumar, Anil Rai and Dinesh Kumar (2014). Locus minimization in breed prediction using Artificial neural network approach. Animal Genetics. 45 (6), 898-902.
Iquebal MA, Sarika, Dhanda, SK, Arora V, Dixit, SP, Raghava GPS, Rai A and Kumar D (2013). Development of a model webserver for breed identification using microsatellite DNA marker. BMC Genetics 2013, 14:118. (http://www.biomedcentral.com/1471-2156/14/118/abstract).
Iquebal MA, Sarika, Arora Vasu, Verma Nidhi, Rai Anil and Kumar Dinesh (2013). First whole genome based microsatellite DNA marker database of tomato for mapping and variety identification. BMC Plant Biology 2013, 13:197. (http://www.biomedcentral.com/1471-2229/13/197/abstract).
Sarika, Arora, Vasu, Iquebal, M.A., Rai, Anil, and Kumar, Dinesh (2013). PIPEMicroDB: Microsatellite database and primer generation tool for pigeonpea genome. Database: The Journal of Biological Databases and Curation. Vol. 2013, Article ID bas054, doi:10.1093/database/bas054
Bajetha, Garima, Bhati, Jyotika, Sarika, Iquebal, M. A., Rai, Anil, Arora, Vasu and Kumar, Dinesh (2013). Analysis and functional annotation of expressed sequence tags of Water Buffalo, Animal Biotechnology. 24 (1), 25-30. (http://www.tandfonline.com/doi/pdf/10.1080/10495398.2012.737884)
Sarika, Arora, Vasu, Iquebal, M.A., Rai, Anil, and Kumar, Dinesh (2013). In silico mining of putative microsatellite markers from whole genome sequence of water buffalo (Bubalis bubalis) and development of first BuffSatDB. BMC Genomics. 14, 43 (19 January, 2013) (http://www.biomedcentral.com/1471-2164/14/43/abstract)
1. A Journal of Biotechnology (2012) 11:39, 9315-9322 ; NAAS Score 45 (A045) 7/10.
2. A Journal of Biotechnology(2012) 11:50, 11057-11064, NAAS Score 45 (A045) 7/10.
Annals of Microbiology (2012)62-2-655-666 Springer, NAAS Score 126 (A126) 6.8/10. 3. International J of Dairy Tech( 2011) 64(3)437-443, NAAS Score 874 (I111) 7.3/10.
4. Bioresource Technology (2011)102:10, 5968-5975- Elsevier NAAS Score 319 (B088) 8.1/10.
5. Immunogenetics (2011): 63: 2, 115-9 Springer, Thomson Reuter IF 2.934.
6. Science (2009), 324 (5926), 522-528(USA), NAAS Score 1669 (S007) 10/10. 7. PNAS (2009)- 46:19250-19255 (USA); NAAS Score 1589 (P100) 9.1/10. 8. 9. Dairy Sci & Tech (2009) 89: 531–540. Springer, NAAS Score 504 (D005) 7.5/10.
Small Ruminant Research (2009), 82 (2-3)156-160, Elsevier Journals, NAAS Score 1688 (S025) 7.5/10.
Food Biotechnology (2009), 23 (1), 83-96,Taylor & Francis, NAAS Score 668 (F035) 7/10.
SAGA (2009), 58(4), 205-208 , Taylor & Francis, NAAS Score 6 (A006) 6.9/10.
Journal of Applied Genetics(2008), 49(4), 379-81 Springer Thomson Reuter IF 1.2.
SAJAS (2008) 38:2, 131-135, NAAS Score 1698 (S034) 6.9/10.
Genetika (2007), 43(9), 1198-208, Springer Journals, Thomson Reuter IF 0.427.
Meat Sciences (2007), 76, 658-665, Elsevier journals, NAAS Score 1347 (M015) 7.8/10. Antonie van Leeuwenhoek (2015), Journal of Microbiology (Springer), Thompson IF =2.137, NAAS score 8.07.
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