Agricultural Bioinformatics

Ongoing

• Institute funded

• Externally funded

Completed

• Institute funded

• Externally funded

(2019)

• Insights on genomic diversity of Vibrio spp. through Pan-genome analysis Suganya Nathamuni1 & Ashok Kumar Jangam1 &Vinaya Kumar Katneni1 & Ashok Selvaraj1 &Karthic Krishnan1 &Sujeet Kumar2 &Satheesha Avunje2 &Sivamani Balasubramaniam1 &Monendra Grover3 & Shankar V. Alavandi2 &Vijayan K. Koyadan1.Annals of Microbiology. https://doi.org/10.1007/s13213-019-01539-7
• A decade of research in quantum bioinformatics: a quantum computational view of the universe with special reference to living organisms Monendra Grover*, Dwijesh Chandra Mishra ,Ranjeet R. Kumar and Manjeet Kaur International Journal of Current Research Vol. 11, Issue, 10, pp.7769-7770, October, 2019.
• Deepender Kumar, Vinod Chhokar, Sonia Sheoran, Rajender Singh, Pradeep Sharma, Sarika Jaiswal, M. A. Iquebal, AkankshaJaiswar, J. Jaisri, U. B. Angadi, Anil Rai, G. P. Singh, Dinesh Kumar, Ratan Tiwari, Characterization of genetic diversity and population structure in wheat using array based SNP markers, MolBiol Rep (2019). https://doi.org/10.1007/s11033-019-05132-8
• MajumdarSayantiGuha, Rai Anil, Mishra Dwijesh Chandra, (2019). Integrated Framework for Selection of Additive and Nonadditive Genetic Markers for Genomic Selection. Journal of Computational Biology. https://doi.org/10.1089/cmb.2019.0223.
• Meher, P. K., Sahu, T. K., Gahoi, S., Satpathy, S. and Rao, A. R. (2019). Evaluating the performance of sequence encoding schemes and machine learning methods for splice sites recognition. Gene, 705, 113-126.
• Sahu, T. K., Pradhan, D., Rao, A. R. and Jena, L. (2019). In silico site-directed mutagenesis of neutralizing mAb 4C4 and analysis of its interaction with GH loop of VP1 to explore its therapeutic applications against FMD. Journal of Biomolecular Structure and Dynamics, 37(10), 2641-2651.
• Bhat, B., Singh, A., Iqbal, Z., Kaushik, J. K., Rao, A. R., Ahmad, S. M., Bhat, H., Ayaz, A., Sheikh, F.D., Kalra, S., Shanaz, S., Mir, M.S., Agarwal, P.K., Mohapatra, T. and Shanaz, S. (2019). Comparative transcriptome analysis reveals the genetic basis of coat color variation in Pashmina goat. Scientific reports, 9(1), 6361.
• Renu, Sanjay Kumar Gupta, Ashutosh Kumar Rai, Khan Mohammad Sarim, Anu Sharma, NeerajBudhlakoti, Devendra Arora, Dhiraj Kumar Verma , DhananjayaP.Singh (2019). Metaproteomic data of maize rhizosphere for deciphering functional diversity. Data in Brief, https://doi.org/10.1016/j.dib.2019.104574.
• B. Angadi, K. K. Chaturvedi, S. Srivastava and A. Rai, “A Novel Way of Comparing Protein 3D Structure Using Graph Partitioning Approach,” in IEEE/ACM Transactions on Computational Biology and Bioinformatics. https://doi.org/10.1109/TCBB.2019.2938948
• A,PrasadK.V.S.V.,RaviD.,KhanA.A.,Reddy R.,Angadi U.B.,Blümmel M., Embracing whole plant optimization of rice and wheat to meet the growing demand for food and feed, Field Crops Research, https://doi.org/10.1016/j.fcr.2019.107634
• Mir Asif Iquebal, Pradeep Sharma, Rahul Singh Jasrotia, Sarika Jaiswal, Amandeep Kaur, Monika Saroha, U. B. Angadi, Sonia Sheoran, Rajender Singh, G. P. Singh, Anil Rai, Ratan Tiwari & Dinesh Kumar, RNAseq analysis reveals drought-responsive molecular pathways with candidate genes and putative molecular markers in root tissue of wheat, Scientific Reports volume 9, Article number: 13917 (2019) , https://doi.org/10.1038/s41598-019-49915-2
• Ali, Abid, Kumar, Rakesh, Iquebal, Mir Asif, Jaiswal, Sarika, Kumar, Dinesh and khan, Asad (2018). Role of conserved residues in catalytic activity of NDM-1: an approach of site directed mutagenesis and molecular dynamics. Physical Chemistry Chemical Physics-a Journal of Royal Society of Chemistry. (https://pubs.rsc.org/en/content/articlelanding/2019/cp/c9cp02734c/unauth#!divAbstract)
• Rai, S.N., Srivastava, S., Pan, J., Wu, X., Rai, S.P., Mekmaysy, C.S., DeLeeuw, L., Chaires, J.B., Garbett, N.C (2019). Multi-group diagnostic classification of high-dimensional data using differential scanning calorimetry plasma thermograms. PLOS ONE 14(8): e0220765. https://doi.org/10.1371/journal.pone.0220765
• Rasal, Kiran D., Iquebal, Mir Asif, Jaiswal, Sarika, Dixit, Sangita, Vasam, Manohar, Nandi, Samiran, Raza, Mustafa, Sahoo, Lakshman, Angadi, UB, Rai, Anil, Kumar, Dinesh, and Sundaray, Jitendra Kumar Sundaray (2019). Liver specific microRNAs identification in farmed carp, Labeobata (Hamilton, 1822) fed with starch diet using high-throughput sequencing. Marine Biotechnology (https://link.springer.com/article/10.1007/s10126-019-09912-y)
• Rasal, Kiran D., Iquebal, Mir Asif, Pandey, Amrendra, Behera, Parmeswari, Jaiswal, Sarika, Vasam, Manohar, Dixti, Sangita, Raza, Mustafa, Sahoo, L., Nandi, Samiran, Angadi, UB, Rai, Anil, Kumar, Dinesh Nagpure, Naresh, Chaudhari, Aparna and Sundaray, Jitendra Kumar (2019) Revealing liver specific microRNAs linked with carbohydrate metabolism of farmed carp, Labeorohita (Hamilton, 1822). Genomics (https://www.sciencedirect.com/science/article/pii/S088875431930237X?via%3Dihub).
• Bibwe, Bhushan, Mani, Indra, Kar, Abhijeet, Samuel, D.V.K., Iquebal, Mir Asif (2019). Optimization of oil loading and starch-protein ratio for encapsulation of flaxseed oil using response surface methodology. Journal of Agricultural Engineering, 56(2), 80-90.
• Farooqi Mohammad Samir, Mishra DC, Chaturvedi KK, Rai Anil, Lal SB, Kumar Sanjeev, BhatiJyotika and Sharma Anu. (2019) A Review on Recent Statistical Models for RNA-Seq Data. Journal of Applied Bioinformatics & Computational Biology. 8:1 DOI: 10.4172/2329-9533.1000162.
• Jasrotia, Rahul Singh, Yadav, Pramod Kumar, Iquebal, Mir Asif, Bhatt, S.B., Arora, Vasu, Angadi, U.B., TomarRukam Singh, Jaiswal, Sarika, Rai, Anil, Kumar, Dinesh (2019). VigSatDB: Genome wide microsatellite DNA marker database of three species of Vigna for germplasm characterization and improvement. Database: The Journal of Biological Databases and Curation. (https://academic.oup.com/database/article/doi/10.1093/database/baz055/5506750)
• Sheoran, Sonia, Jaiswal Sarika, Kumar, Deepender, Raghav, Nishu, Sharma, Ruchika, Pawar, Sushma, Paul, Surinder, Iquebal, M.A., Jaiswar, Akanksha, Sharma, Pradeep, Singh, Rajender, Singh, CB Gupta, Arun, Kumar, Neeraj, Angadi, U.B., Rai, Anil, Singh, G.P., Kumar, Dinesh, Tiwari, Ratan (2018). Uncovering genomic regions associated with 36 agro-morphological traits in Indian spring wheat using GWAS. Frontiers in Plant Science .
• BudhlakotiNeeraj, Mishra Dwijesh Chandra, Rai Anil, Lal S. B., Chaturvedi Krishna Kumar, Kumar Rajeev Ranjan (2019). A Comparative Study of Single Trait and Multi-Trait Genomic Selection. Journal of Computational Biology. Vol 26, pg 1-13.
• Jaiswal, Sarika, Iquebal, M.A., Arora, Vasu, Angadi, U.B., Khokar, R.S., Sharma, Pradeep, Sheoran, Sonia, Singh, G.P., Rai, Anil, Kumar, Tiwari, Ratan, Dinesh (2019). Development of species specific putative miRNA and its target prediction tool in wheat (Triticumaestivum L.). Scientific Reports, https://www.nature.com/articles/s41598-019-40333-y DOI : 10.1038/s41598-019-40333-y
• Singh, Rajender, Iquebal, MA, Mishra, CN, Jaiswal, Sarika, Kumar, Deepender, Raghav, Nishu, Paul, Surinder, Sheoran, Sonia, Sharma, Pradeep, Gupta, Arun, Tiwari, Vinod, Angadi, UB, Kumar, Neeraj, Rai, Anil, Singh, GP, Kumar, Dinesh and Tiwari, Ratan (2019) Development of model web-server for crop variety identification using throughput SNP genotyping data. Scientific Reports (Nature Group of Journal). https://www.nature.com/articles/s41598-019-41204-2
• Sureshkumar V, Dutta Bipratip, Kumar Vishesh, Prakash G, Mishra Dwijesh C, Chaturvedi KK, Rai Anil, SevanthiAmitha Mithra, SolankeAmolkumar U (2019). RiceMetaSysB: a database of blast and bacterial blight responsive genes in rice and its utilization in identifying key blast-resistant WRKY genes. Database. https://doi.org/10.1093/database/baz015.
• Jerome A, Bhati J, Mishra DC, Chaturvedi KK, Rao AR, Rai A, Sikka P, Singh I (2019). MicroRNA-related markers associated with corpus luteum tropism in buffalo (Bubalusbubalis). Genomics. https://doi.org/10.1016/j.ygeno.2019.01.018
• Mukherjee, Sabyasachi, Mukherjee, Anupama, Singh, Rahul Jasrotia, Jaiswal, Sarika, Iquebal, Mir Asif, Longkumer, Imsusosang, Mech, Moonmoon, Vupru, Kezhavituo, Khate, Kobu, Rajkhowa, Chandan, Mitra, Abhijit, Rai, Anil and Kumar, Dinesh (2019). Muscle transcriptome signature and gene regulatory network in two divergent lines of a semi-domesticated bovine Mithun (Bos frontalis). Genomics (Elsevier Journal) (https://doi.org/10.1016/j.ygeno.2019.02.004)
• Singh Indra , Deb Rajib , Kumar Sanjeev , Singh Rani, Andonissamy Jerome, SmitaShuchi , Singh GyanendraSengar, Kumar Rajiv, Ojha Krishna Kumar, SahooNiharRanjan, S Murali , ChandranRejani, V Radhakrishnan Nair, Lal SB, Mishra Dwijesh Chandra & Rai Anil (2019). Deciphering Foot-and-Mouth Disease (FMD) virus-host Tropism. Journal of Biomolecular Structure and Dynamics. Deciphering Foot-and-Mouth Disease (FMD) virus-host Tropism. Journal of Biomolecular Structure and Dynamics, DOI: 10.1080/07391102.2019.1567386
• SayantiGuhaMajumdar, Anil Rai, and Dwijesh C. Mishra. (2019). Identification of genetic markers for increasing agricultural productivity: An empirical study. Indian Journal of Agricultural Sciences, 89 (10): 1708–13.
• Kapil Choudhary, Girish Kumar Jha, Rajeev R Kumar and Dwijesh Chandra Mishra (2019). Agricultural commodity price analysis using ensemble empirical mode decomposition: A case study of daily potato price series. Indian Journal of Agricultural Sciences. Vol 89(5), pg 882-6.
• Sah, Uma, Kumar, Narendra, Saxena, Hem, Dubey, S.K., Iquebal, M.A., Bhat, Shripad and Singh, S.K. (2019). Validation of farmer to farmer extension model for dissemination of quality seeds of pulse crops: experiences from Bundelkhand Region of Uttar Pradesh. Indian Journal of Extension Education, 54(2): 176-182.

(2018)

• Das, Ritwika, Arora, Vasu, Jaiswal, Sarika, Iquebal, MA, Angadi, UB, Singh, Rakesh, Shil, Sandip, Rai, Anil and Kumar Dinesh (2018). PolyMorphPredict: Web server for rapid polymorphic SSR locus discovery from whole genome and transcriptome data. Frontiers in Plant Sciences. https://www.frontiersin.org/articles/10.3389/fpls.2018.01966/full
• Jaiswal, Sarika, Jadhav, Pravin V., Jasrotia, Rahul Singh, Kale, Prashant B., Kad, Snehal K., Moharil, Mangesh P., Dudhare, Mahendra S., Deshmukh, Amit G., Mane, Shyamsundar S., Nandanwar, Ravindra S., Penna, Suprasanna, Manjaya, Joy G., Iquebal, Mir Asif, Tomar, Rukam Singh, Rai, Anil, Kumar, Dinesh (2018). Transcriptomic signature reveals mechanism of flower bud distortion in witches’-broom disease of soybean (Glycine max). BMC Plant Biology https://bmcplantbiol.biomedcentral.com/articles/10.1186/s12870-018-1601-1
• Meher, P.K., Sahu, T.K., Raghunandan, K., Gahoi, S., Choudhary, N.K., Rao, A.R. (2018). HRGPred: Prediction of herbicide resistant genes with k-mer nucleotide compositional features and support vector machine. Scientific Reports, 9: 778. https://doi.org/10.1038/s41598-018-37309-9
• Meher, P.K., Sahu, T.K., Gahoi, S., Tomar, R., Rao, A.R. (2018). funbarRF: DNA barcode-based fungal species prediction using multiclass Random Forest supervised learning model. BMC Genetics, 20:2. https://doi.org/10.1186/s12863-018-0710-z
• Kumar Ranjeet R, Singh Khushboo, Ahuja Sumedha,TasleemMohd, Singh Indra, Kumar Sanjeev, Grover Monendra, Mishra Dwijesh, Rai Gyanendra K, GoswamiSuneha, Singh Gyanendra P, Chinnusamy Viswanathan, Rai Anil, Praveen Shelly (2018). Quantitative proteomic analysis reveals novel stress-associated active proteins (SAAPs) and pathways involved in modulating tolerance of wheat under terminal heat. Functional & Integrative Genomics, pp 1–20.https://doi.org/10.1007/s10142-018-0648-2
• Aarti Singh and AnuSharma(2018). A clustering-based recommendation engine for restaurants. Int. J. Advanced Intelligence Paradigms, Vol. 11, Nos. 3/4
• Mishra Dwijesh Chandra *, Kumar Sanjeev, Lal SB, SahaArijit, Chaturvedi KK, BudhlakotiNeeraj and Rai Anil (2018). TAGPT: A Web Server for Prediction of Trait Associated Genes using Gene Expression Data. Annals of Genetics and Genetic Disorders. 1(1): 1003.
• Varshney, R., Budhlakoti, N. &Ballal, C.R. (2018). Functional response of GeocorisochropterusFieber (Hemiptera: Geocoridae) to different egg densities of Helicoverpaarmigera (Hübner) (Lepidoptera: Noctuidae).Phytoparasitica. DOI: https://doi.org/10.1007/s12600-018-0687-1
• Purru, S., Sahu, S., Rai, S., Rao, A.R. and Bhat, K.V. (2018). GinMicrosatDb: a genome-wide microsatellite markers database for sesame (Sesamumindicum L.). Physiology and Molecular Biology of Plants. doi: 10.1007/s12298-018-0558-8.
• Prajapat, R.K., Singh, P., Tiwari, P., Mainkar, P., Sahu, S., Rao, A.R. and Kansal, R. (2018). In Silico Analysis and Molecular Docking Studies of Cajanuscajan Lectin against Aminopeptidase-N Receptor from Acyrthosiphonpisum. International Journal of Current Microbiology and Applied Sciences, 7(06), 959-967. doi: 10.20546/ijcmas.2018.706.114.
• Dalal, M., Sahu, S., Tiwari, S., Rao, A.R. and Gaikwad, K. (2018). Transcriptome analysis reveals interplay between hormones, ROS metabolism and cell wall biosynthesis for drought-induced root growth in wheat. Plant Physiology and Biochemistry, 130, 482-492, doi: 10.1016/j.plaphy.2018.07.035
• Mittal, S., Banduni, P., Mallikarjuna, M.G., Rao, A.R., Jain, P.A., Dash, P. and Nepolean, T. (2018). Structural, functional and evolutionary characterization of major drought transcription factors families in maize. Frontiers in Chemistry: Agricultural Biological Chemistry, doi: 10.3389/fchem.2018.00177.
• Sahu, S.†, Rao, A.R.†, Pandey, J., Gaikwad, K., Ghoshal, S. and Mohapatra, T. (2018). Genome-wide identification and characterization of lncRNAs and miRNAs in cluster bean (Cyamopsistetragonoloba). Gene, 667, 112-121. [† – Joint first authors]
• Hukam C. Rawal, S. V. Amitha Mithra, Kirti Arora, Vishesh Kumar, Neha Goel, Dwijesh Chandra Mishra, K. K. Chaturvedi, Anil Rai, S. Vimala Devi, T. R. Sharma and Amolkumar U. Solanke (2018) . Genome-Wide Analysis in Wild and Cultivated Oryza Species Reveals Abundance of NBS Genes in Progenitors of Cultivated Rice. Plant Molecular Biology Reporter. Pages 1-14, https://doi.org/10.1007/s11105-018-1086-y.
• MeherPrabina K., SahuTanmaya K., MohantyJyotilipsa, GahoiShachi, PurruSupriya, Grover Monendra, Rao Atmakuri R. (2018). nifPred: Proteome-Wide Identification and Categorization of Nitrogen-Fixation Proteins of Diaztrophs Based on Composition-Transition-Distribution Features Using Support Vector Machine. Frontiers in Microbiology, 9, 2018. https://www.frontiersin.org/article/10.3389/fmicb.2018.01100
• Islam, S., Chandra, H., Aditya, K. and Lal, S.B. (2018). Small Area Estimation under a Spatial Model using Data from Two Surveys. Int. J. Agricult. Stat. Sci. Vol. 14, No. 1.
• Khatal, Sangita Aba, Ali, Shakir, Hasan, Murtaza, Singh, Dhirendra Kumar, Mishra, Anil Kumar and Iquebal, M.A. (2018). Assessment of Groundwater Recharge in a Small Ravine Watershed in Semi-arid Region of India. International Journal of Current Microbilogy and Applied Sciences, 7(2): 2552-2565.
• Kumar RR, Goswami S, Singh K, Dubey K, Rai GK, Singh B, Singh S, Grover M, Mishra D, Kumar S, Bakshi S, Rai A, Pathak H, Chinnusamy V, Praveen S, Characterization of Novel Heat-Responsive Transcription Factor (TaHSFA6e) Gene Involved in Regulation of Heat Shock Proteins (HSPs) — A Key Member of Heat Stress-Tolerance Network of Wheat, Journal of Biotechnology (2010), https://doi.org/10.1016/j.jbiotec.2018.05.008 NAAS Rating : 8.667
• Kumar A, Farooqi MS, Mishra DC, Kumar S,Rai A, Chaturvedi KK, Lal SB, Sharma, A. (2018). Prediction of miRNA and Identification of their Relationship Network Related to Late Blight Disease of Potato. Microrna. 7(1):11-19. doi: 10.2174/2211536607666171213123038. PubMed PMID: 29237394.
• Jangam AK, Bhuvaneswari T, Krishnan AN, Katneni VK, Avunje S, Grover M, Kumar S, Alavandi SV, Vijayan KK. 2018. Draft genome sequence of Vibrio parahaemolyticus strain VP14, isolated from a Penaeusvannamei culture farm. Genome Announc 6:e00149-18. https://doi.org/10.1128/genomeA.00149-18.
• Junaid, A., Kumar, H., Rao, A.R., Patil, A.N., Singh, N.K. and Gaikwad, K. (2018). Unravelling the epigenomic interactions between parental inbreds resulting in an altered hybrid methylome in Pigeonpea. DNA Research, doi: 10.1093/dnares/dsy008.
• Arora, Vasu, Kapoor, Neera, Fatma, Samar, Jaiswal, Sarika, Iquebal, Mir Asif, Rai, Anil and Kumar, Dinesh (2018). BanSatDB: Whole genome based database of putative and experimentally validated microsatellite markers of three Musa spp. Crop Journal. https://www.sciencedirect.com/science/article/pii/S2214514118300205.
• Das Samarendra, Rai Anil, Mishra D. C. & Rai. Shesh N. (2018). Statistical Approach for Gene Set Analysis with Trait Specific Quantitative Trait Loci. Nature Scientific Reports. 8:2391 | DOI:10.1038/s41598-018-19736-w.
• Das Samarendra, Rai Anil, Mishra D. C. & Rai. Shesh N. (2018). Statistical Approach for Selection of Biologically Informative Genes. Gene. https://doi.org/10.1016/j.gene.2018.02.044
• Jaiswal, Sarika, Antala, Tushar J., Kheni, Jashminkumar, Chopra, Meenu, Mandavia, M. K., Tomar, Rukam S., Jasrotia, Rahul Singh, Iquebal, M.A., Angadi, U.B., Rai, Anil, Kumar, Dinesh (2017) Transcriptomic signature of drought response in pearl millet (Pennisetumglaucum (L.) and development of web-genomic resources. Nature Scientific Reports: https://www.nature.com/articles/s41598-018-21560-1.
• Meher, P.K., Sahu, T.K., Gahoi, S. and Rao, A.R. (2017). ir-HSP: Improved recognition of heat shock proteins, their families and sub-types based on g-spaced di-peptide features and support vector machine. Frontiers in Genetics: Bioinformatics and Computational Biology. 8:235, doi: 10.3389/fgene.2017.00235.
• Islam, S., Sharma, A.K., Sharma, K., Farooqi, M.S., Chaturvedi, K.K. (2018). Diagnosing wheat disease using expert system. Journal of the Indian Society of Agricultural Statistics. 72(3):255-259.
• 1अनुशर्मा, ज्योतिकाभाटी, शशिभूषणलाल, कृष्णकुमारचतुर्वेदी, मोहम्मदसमीरफ़ारूकीऔरअनिलराय (2018). संगणनात्मकविधियोंकेद्वाराअरहरमेंमाइक्रो-आर.एन.ए. कीपहचानएवंउसकाविवरण, भारतीयकृषिअनुसंधानपत्रिका, 33(1), 51-57.
• Supriya, P., Rao, A.R. and Bhat, K.V. (2018). Transcriptome sequencing of sesame (Sesamumindicum) using Illumina Platform. Indian Journal of Agricultural Sciences, 88 (3): 442-446.

(2017)

• Iquebal, Mir A, Jaiswal, Sarika, Mahato, Ajay K, Jayaswal, Pawan K, Angadi, U.B., Kumar, Neeraj, Sharma, Nimisha, Singh, Anand, Srivastav, Manish, Praksh, Jai, Singh, Sanjay K, Khan, Kasim, Mishra, Rupesh K, Rajan, Shailendra, Bajpai, Anju, Sandhya, BS, Nischita, Puttaraju, Ravishankar, KV, Dinesh, MR, Rai, Anil, Kumar, Dinesh, Sharma, Tilak R., Singh, Nagendra K. (2017). MiSNPDb: a web based genomic resources of tropical ecology fruit mango (Mangifera indica L.) for phylogeography and varietal differentiation. Nature Scientific Reports 7, Article number: 14968(2017) (https://www.nature.com/articles/s41598-017-14998-2)
• Tandon, G., Singh, S., Kaur, S., Sarika, Iquebal, M.A., Rai, A., Kumar, D. (2017). In silico identification of the genes related to biotic stresses in Solanum lycopersicum. Genomics Data.14, 82-90.
• Choudhary, Pooja, Malhotra, Suruchi, Bharadwaj, C, Gaikwad, Kishor, Kaur, Sukhdeep, Chopra, Meenu, Tandon, Gitanjali, Jaiswal, Sarika, Iquebal, Mir A, Rai, Anil, Kumar, Dinesh, Srinivasan, Jain, Pradeep K. (2017). Transcriptomic signature of fusarium toxin in chickpea unveiling wilt pathways and marker discovery. Physiological and Molecular Plant Pathology , 100, 163-177.
• Arora, K., Panda, K.K., Mittal, S., Mallikarjuna, M.G., Rao, A.R., Dash, P.K. and Thirunavukkarasu, N. (2017). RNAseq revealed the important gene pathways controlling adaptive mechanisms under waterlogged stress in maize. Scientific Reports, 7: 10950,1-12, DOI:10.1038/s41598-017-10561-1.
• Jasrotia, Rahul Singh, Iquebal, Mir Asif, Yadav, Pramod Kumar, Kumar, Neeraj, Jaiswal, Sarika, Angadi, Ulavappa B., Rai, Anil, Kumar, Dinesh (2017). Development of transcriptome based web genomic resources of yellow mosaic disease in Vigna mungo. Physiology and Molecular Biology of Plants. https://link.springer.com/article/10.1007/s12298-017-0470-7
• Kumar Devendra and Farooqi Mohammad Samir (2017). The Type I Generalized Half Logistic Distribution Based On Generalized Order Statistics, International Journal of Agricultural and Statistical Sciences, 13 (1), 337-344
• Thorat, DS, Sahoo, PK, De, D and Iquebal, MA (2017). Prototype: A ridge profile mechanical power weeder. Agricultural Mechanization in Asia, Africa and Latin America, 48 (1), 81-86.
• Gioi, H.V., Mallikarjuna, M.G., Mittal, S., Banduni, P., Jha, S.K., Dash, P., Basappa, A.M., Gadag, R.N., Rao, A.R. and Thirunavukkarasu, N. (2017). Variable level of dominance of candidate genes controlling drought functional traits in maize hybrids, Frontiers in Plant Science, 8:940, DOI: 10.3389/fpls.2017.00940.
• Aravind, J., Rinku, S., Pooja, B., Shikha, M., Kaliyugam, S., Mallikarjuna, M. G., Kumar, A, Rao, A.R. and Nepolean, T. (2017). Identification, Characterization, and Functional Validation of Drought-responsive MicroRNAs in Subtropical Maize Inbreds. Frontiers in Plant Science, 8:941, DOI: 10.3389/fpls.2017.00941.
• Das, S, Meher, PK, Rai, A, Bhar LM, Mandal BN (2017) Statistical Approaches for Gene Selection, Hub Gene Identification and Module Interaction in Gene Co-Expression Network Analysis: An Application to Aluminum Stress in Soybean (Glycine max L.). PLoS ONE 12(1): e0169605. DOI:10.1371/journal.pone.0169605.

• Biswas, A, Rai, A, Ahmad, T and Sahoo, PM (2017). Spatial Estimation and Rescaled Spatial Bootstrap Approach for Finite Population. Communications in Statistics -Theory and Methods, 46(1), 373-388.

• Mishra, DC, Smita, S, Singh I, Devi, MN,Kumar S, Farooqi, MS, Chaturvedi, KK,Rai,A (2017). Prediction of novel putative miRNAs and their targets in buffalo. Indian Journal of Animal Sciences, 87(1), 59–63
• Som, S, Burman, RR, Sharma, JP, Sangeetha, V, Lenin, V and Iquebal, MA (2017). Assessment of knowledge and attitude level of stakeholders on good agricultural practices (GAP) for grape. Indian Journal of Agricultural Sciences, 87 (2), 273-277.
• Islam, S., Sharma, R.K., Chhokar, R.S., Dhar, S., Sabir, N., Chaturvedi, K.K., Singh, R., Farooqi, M.S. and Sharma, K. (2017). Expert system for the identification and control of weeds in wheat crop. Annals of Agricultural Research, New Series. 38(2):1-9.
• Iquebal, Mir Asif,Soren,Khela Ram, Gangwar, Priyanka, Shanmugavadevel, P S, Aravind K, Singla, Deepak, Jaiswal,Jasrotia, Rahul Singh, Sarika, Chaturvedi, Sushil K, Singh, NP, Varshney, Rajeev K, Rai, Anil, Kumar, Dinesh (2017).Discovery of herbicide resistance genes and its regulatory network in chickpea using transcriptome sequencing. Frontiers in Plant Sciences, 8:958. doi: 10.3389/fpls.2017.00958. http://journal.frontiersin.org/article/10.3389/fpls.2017.00958/fulltarget
• Monendra Grover,Dwijesh C. Mishra, Naveen Sharma, Sudhir Srivastava, Anil Rai (2017) The maximum computational capacity of proteins involved in abiotic stress differs significantly from the proteins not involved in abiotic stress, National Academy Science Letters, , 1-3, 10.1007/s40009-017-0557-2.
• Thangaraj Sindhu, Thiruvengadam Venkatesan, Gandhi Gracy, Sushil Kumar Jalali, Anil Rai (2017). Exploring the resistance-developing mutations on Ryanodine receptor in diamondback moth and binding mechanism of its activators using computational study.  Biochemical Engineering Journal http://dx.doi.org/10.1016/j.bej.2017.01.013.
• Meher, P.K., Sahu, T.K., Saini, V. and Rao, A.R. (2017). Predicting antimicrobial peptides with improved accuracy by incorporating the compositional, physico-chemical and structural features into Chou’s general PseAAC. Scientific Reports, 7:42362, DOI: 10.1038/srep42362
• Nepolean, T., Sharma, R., Singh, N., Shiriga, K., Mohan, S., Mittal, S., Mittal, S., Mallikarjuna, M.G., Rao, A.R., Dash, P.K., Hossain, F. and Gupta, H.S. (2017). Genomewide Expression and Functional Interactions of Genes under Drought Stress in Maize. International Journal of Genomics, 2017, Article ID 2568706, 14 pages, doi:10.1155/2017/2568706
• M Grover, S Kumar, R Kumar. (2017). Quantum mechanics and biology—some new thoughts. Int J Sci Res Sci Technol 3 (1)
• Sharma, Soumya, Jaiswal, Sarika, Archak, Sunil (2017). Annotation of gene sequence and protein structure of brinjal EDS1. Bioinformation, 13 (3), 54-59.
• Verma SK, Jasrotia RS, Iquebal MA, Jaiswal S, Angadi UB, Rai A, Kumar D, Deciphering genes associated with root wilt disease of coconut and development of its transcriptomic database (CnTDB). Physiological and Molecular Plant Pathology (2017), doi: 10.1016/j.pmpp.2017.03.011.
• Meher, P.K., Sahu, T.K., Banchariya, A. and Rao, A.R. (2017). DIRProt: A computational approach for discriminating insecticide resistant proteins from non-resistant proteins. BMC Bioinformatics, 18:190, DOI: 10.1186/s12859-017-1587.
• Mittal, S., Arora, K., Rao, A.R., Mallikarjuna, M., Gupta, H.S. and Thirunavukkarasu, N.(2017). Genomic selection for drought tolerance using genome-wide SNPs in maize. Frontiers in Plant Science, 8:550. DOI: 10.3389/fpls.2017.00550
• Himanshu, Chaturvedi, K.K., Bandopadhyay, A. and Jain, S. (2017). PATRICIA Trie based time and memory optimization for fast network motif search. Indian Journal of Animal Sciences, 87(4):512-519.
• Om Prakash Gupta, Deepti Nigam, Anil Dahuja, Sanjeev Kumar, Vinutha T, Archana Sachdev, Shelly Praveen (2017): Regulation of isoflavone biosynthesis by mirnas in two contrasting soybean genotypes at different seed developmental stages. Frontiers in Plant Sciences, 8:567. doi: 10.3389/fpls.2017.00567.
• Ranjeet R. Kumar, Suneha Goswami, Mohammad Shamim, Kavita Dubey,  Khushboo Singh, Shweta Singh,  Yugal K. Kala,  Ravi R.K. Niraj,  Akshay Sakhrey,  Gyanendra P. Singh,  Monendra Grover,  Bhupinder Singh, Gyanendra K. Rai,  Anil K. Rai,  Viswanathan Chinnusamy and  Shelly Praveen (2017).  Exploring the heat-responsive chaperones and microsatellite markers associated with terminal heat stress-tolerance in developing wheat. Funct. Integr. Genomics, DOI: 10.1007/s10142-017-0560
• Kumar S, Jangam AK, Akhil V, Rajendran V, Katneni VK, Sahaya Rajan JJ, Grover M, Nagaleekar VK, Alavandi SV, Vijayan KK. 2017. Draft genome sequence of the luminescent strain Vibrio campbellii LB102, isolated from a black tiger shrimp (Penaeus monodon) broodstock rearing system. Genome Announc 5:e00342-17. https://doi.org/10.1128/genomeA.00342-17.
• Chandel, C., Dubey, M., Gupta, S., Patil, A.H. and Rao, A.R. (2017). Identification and characterization of a grain micronutrient related OsFRO2 rice gene ortholog from micronutrient-rich little millet (Panicum sumatrense), 3 Biotech, 7:80, DOI 10.1007/s13205-017-0656-2.
• Tandon, G., Singh, S., Kaur, S., Sarika, Iquebal, M.A., Rai, A., Kumar, D. (2017). Computational deciphering of biotic stress associated genes in tomato (Solanum lycopersicum). Genomics Data. 14, 82-90.
• Iquebal, Mir Asif, Soren, Khela Ram, Gangwar, Priyanka, Shanmugavadevel, P S, Aravind K, Singla, Deepak, Jaiswal, Jasrotia, Rahul Singh, Sarika, Chaturvedi, Sushil K, Singh, NP, Varshney, Rajeev K, Rai, Anil, Kumar, Dinesh (2017). Discovery of putative herbicide resistance genes and its regulatory network in chickpea using transcriptome sequencing. Frontiers in Plant Science, 8:958. doi: 10.3389/fpls.2017.00958.
• Iquebal, Mir A., Tomar, Rukam Singh, Parakhia, M.V., Singla, Deepak, Jaiswal, Sarika, Rathod, V.M., Padhiyar, S.M., Kumar, Neeraj, Rai, Anil, and Kumar, Dinesh. (2017) Draft whole genome sequence of groundnut stem rot fungus Athelia rolfsii revealing genetic architect of its pathogenicity and virulence. Scientific Reports, 7, Article number: 5299 https://www.nature.com/articles/s41598-017-05478-8 doi:10.1038/s41598-017-05478-8.
• MS Farooqi, A Kumar, DC Mishra, S Kumar, A Rai, KK Chaturvedi, SB Lal. (2017). Prediction of miRNA and Identification of their Relationship Network Related to Late Blight Disease of Potato. MicroRNA
• Singh Indra, Smita Shuchi, Mishra Dwijesh C., Kumar Sanjeev, Singh Binay K., Rai Anil. Abiotic Stress Responsive miRNA-Target Network and Related Markers (SSR and SNP) in Brassica juncea. Frontiers in Plant Science. https://doi.org/10.3389/fpls.2017.01943
• Aarti Singh and Anu Sharma (2017). MAICBR: A Multi-agent Intelligent Content-Based Recommendation System. Springer Lecture Notes in Networks and Systems, Vol. 10, pp 399-411.
• Jaiswal, Sarika, Sheoran, Sonia, Arora, Vasu, Angadi, U.B., Iquebal, M.A., Raghav, Nishu, Aneja, Bharti, Kumar Deepender, Khokar, R.S., Sharma, Pradeep, Singh, G.P., Rai, Anil, Tiwari, Ratan, Kumar, Dinesh. (2017). Putative Microsatellite DNA Marker-Based Wheat Genomic Resource for Varietal Improvement and Management. Frontiers in Plant Sciences. https://www.frontiersin.org/articles/10.3389/fpls.2017.02009/full
• BK Behera, VS Baisvar, K Kumari, AK Rout, S Pakrashi, P Paria, AR Rao. (2017). The complete mitochondrial genome of the Anabas testudineus (Perciformes, Anabantidae) and its comparison with other related fish species. Mitochondrial DNA Part A 28 (2), 161-162
• PK Meher, TK Sahu, S Gahoi, AR Rao. (2017). ir-HSP: Improved recognition of heat shock proteins, their families and sub-types based on g-spaced di-peptide features and support vector machine. Frontiers in Genetics 8, 235.
• S Mittal, MG Mallikarjuna, AR Rao, PA Jain, PK Dash. (2017). Comparative analysis of CDPK family in maize, Arabidopsis, rice and sorghum revealed potential targets for drought tolerance improvement. Frontiers in chemistry 5, 115

(2016)

• aneshan, P., Jain, A., Parmar, B., Rao, A.R., Sreenu, K., Mishra, P., Mesapogu, S., Subrahmanyam, D., Ram, T., Sarla, N. and Rai, V. (2016). Identification of salt tolerant rice lines among interspecific BILs developed by crossing Oryza sativa × O. rufipogon and O. sativa × O. nivara. Australian Journal of Crop Science, 10(2), 220-228.
• Kumar, M., Sarangi, A., Singh, D.K., Rao, A. R. and Sudhishri, S. (2016). Response of wheat cultivars to foliar potassium fertilization under irrigated saline environment. Journal of Applied and Natural Science, 8(1), 429-436.
• Chaturvedi, V., Kumar, A. Mishra, I.M., Singh, J. K., Sahoo, R. N., Jha, G.K. and Lal, S. B. (2016). Study on interventions to reduce vibration transmission to power tiller operator. Journal of Applied and Natural Science. 8 (1): 265 – 272. ISSN: 0974-9411 (Print), 2231-5209 (Online).
• Jyotika Bhati, Pavan Kumar Chaduvula, Sanjeev Kumar*, Soma S. Marla and Anil Rai (2-16); In-silico prediction and functional analysis of salt stress responsive genes in Rice (Oryza sativa), J Rice Res 4: 164. doi:10.4172/2375-4338.1000164
• Pandey N, Grover M, Rai A (2016) Conservation of Properties of Outer Membranes Protein across Host Genera of Pasteurella multocida Suggests Common Mechanism of Action. Mol Biol 5:162. doi:10.4172/2168-9547.1000162
• Badoni, S., Das, S., Sayal, Y.K., Gopalakrishnan, S., Singh, A.K., Rao, A.R., Agarwal, P., Parida, S.K. and Tyagi, A.K. (2016) Genome-wide generation and use of informative intron-spanning and intron-length polymorphism markers for high-throughput genetic analysis in rice. Scientific Reports, 6: 23765 (DOI: 10.1038/srep23765).
• Tiwari, S., Krishnamurthy, S.L., Kumar, V., Singh, B., Rao, A. R., Mithra, S.V.A., Rai, V., Singh, A.K., Singh, N.K. (2016). Mapping QTLs for Salt Tolerance in Rice (Oryza sativa L.) by Bulked Segregant Analysis of Recombinant Inbred Lines Using 50K SNP Chip. PLoS ONE, 11:4, DOI: 10.1371/journal.pone.0153610
• Gautam, Aditi, Sharma, Asuda, Sarika, Fatma, Samar, Arora, Vasu, Iquebal, M.A., Nandi, S., Sundaray, J.K., Jayasanker, J., Rai, Anil, Kumar, Dinesh (2016). Development of antimicrobial peptide prediction tool for aquaculture industries. Probiotics and Antimicrobial Proteins. http://link.springer.com/article/10.1007/s12602-016-9215-0
• Grover, M., Pandey, N. and Rai, A. (2016) First report on Quantum Computational Logic in Biological Networks, International Journal of Innovative Research in Technology and Science, 4:22-24
• Mohammad Samir Farooqi, DC Mishra, Niyati Rai, DP Singh, Anil Rai, KK Chaturvedi, Ratna Prabha and Manjeet Kaur (2016). Genome-wide relative analysis of codon usage bias and codon context pattern in the bacteria Salinibacter ruber, Chromohalobacter salexigens and Rhizobium etli. in Biochemistry and Analytical Biochemistry. 5:257. doi:10.4172/2161-1009.1000257.
• Virupaksh U. Patil1, Vanishree, G, Hemant B. Kardile, Vikas Jindal, SK Dutta, KK Chaturvedi and SK Chakrabarti (2016). In Silico Analysis of Genome wide microsatellite DNA marker in Coffee (Coffea arabica L.). International Journal of Computational Bioinformatics and In Silico Modeling. 5(3):815-818.
• Meher, P.K., Sahu, T.K., Rao, A. R., Wahi, S.D.(2016). Identification of donor splice sites using support vector machine: a computational approach based on positional, compositional and dependency features. Algorithms for Molecular Biology, 11:16, DOI: 10.1186/s13015-016-0078-4.
• Meher, P.K., Sahu, T.K., Rao, A. R., Wahi, S.D.(2016). A computational approach for prediction of donor splice sites with improved accuracy. Journal of Theoretical Biology, 404, 285-294. (http://dx.doi.org/10.1016/j.jtbi.2016.06.013)
• Virupaksh U Patil, Vanishree G, Vivek Hegde, KK Chaturvedi and SK Chakrabarti (2016). Computational Analysis of Short Tandem Repeat (STR) Markers from Genome Wide Expression Regions of Sugar Beet (Beeta vulgaris) In Journal of Applied Bioinformatics and Computational Biology, 5:1. doi: 10.4172/2329-9533.1000125
• Kumar, R.R., Goswami, S., Singh, K., Dubey,K., Singh, S., sharma, R., Verma,N., Kala, Y.K., Rai, G., Grover, M., Mishra, D.C., Singh, B., Pathak, H., Chinnusamy, V., Rai, A. and Praveen, S. (2016)Identification of putative RuBisCo activase (TaRca1) ˗ the catalytic chaperone regulating carbon assimilatory pathway in wheat (Triticum aestivum) under the heat stress . Front. Plant Sci. | doi: 10.3389/fpls.2016.00986, Thomson Reuters IF:4.475
• Shachi Gahoi1‡, Neetesh Pandey2‡, B.V. Suresh1, Monendra Grover2*, S.S. Marla1 and Anil Rai, A computational study on genetic diversity of shatterproof1 and shatterproof2 genes in some members of Oleraceae and its molecular implications Accepted for Publication in Plant Omics Journal, NAAS rating : 6.00
• Meher, P.K., Sahu, T.K and Rao, A.R. (2016). Identification of species based on DNA barcode using k-mer feature vector and Random forest classifier. Gene, doi:10.1016/j.gene.2016.07.010. Thomson Reuters IF:2.319
• Jaiswal, V., Gahlaut, V., Meher, P.K., Mir, R.R., Jaiswal, J.P., Rao, A.R., Balyan, H.S. and Gupta, P.K. (2016). Genome Wide Single Locus Single Trait, Multi-Locus and Multi-Trait Association Mapping for Some Important Agronomic Traits in Common Wheat (T. aestivum L.), PLoS ONE, 11(7): e0159343, doi:10.1371/journal.pone.0159343. Thomson Reuters IF:3.057
• Gupta, S., Singh, Y., Kumar, H., Raj, U., Rao, A.R., Varadwaj, P.K. (2016). Identification of novel abiotic stress proteins in Triticum aestivum through functional annotation of hypothetical proteins. Interdisciplinary Sciences: Computational Life Sciences, doi:10.1007/s12539-016-0178-3. Thomson Reuters IF:0.853
• Suneha Goswami, Ranjeet R. Kumar, Kavita Dubey, Jyoti P. Singh, Sachidanand Tiwari, Ashok Kumar, Shuchi Smita, Dwijesh C. Mishra, Sanjeev Kumar, Monendra Grover, Jasdeep C. Padaria, Yugal K. Kala, Gyanendra P. Singh, Himanshu Pathak, Viswanathan Chinnusamy, Anil Rai, Shelly Praveen and Raj D. Rai. (2016). SSH analysis of endosperm transcripts and characterization of heat stress regulated expressed sequence tags in bread wheat. Frontiers in Plant Science, 7, 1230.
• Garima Vats, Monendra Grover, Avantika Singh, Nidhi Chandra, Neetesh Pandey and Anil Rai (2016) Role of palmitoylation and nitration in modification of large number of proteins associated with drought stress in plants. Agrica, 2016, 5: 59-62
• Srivastava, R., Bajaj, D., Sayal, Y.K., Meher, P.K., Upadhyaya, H.D., Kumar, R., Tripathi, S., Bharadwaj, C., Rao, A.R. and Parida, S.K. (2016). Genome-wide development and deployment of informative intron-spanning and intron-length polymorphism markers for genomics-assisted breeding applications in chickpea. Plant Science, 252, 374-387.
• Meher, P.K., Sahu, T.K., Rao, A.R. and Wahi, S.D. (2016). Discriminating coding from non-coding regions based on codon structure and methylation-mediated substitution: An application in rice and cattle. Computers and Electronics in Agriculture, 129, 66-73, DOI:10.1016/j.compag.2016.09.013
• Meher, P.K., Sahu, T.K., Rao, A. R. (2016). Identification of species based on DNA barcode using k-mer feature vector and Random forest classifier. Gene, 592(2), 316-324.
• Aarti Singh and Anu Sharma (2016). Evaluation of a Secured Interface for Intelligent Recommendations for Web Personalization, International Journal of Computing, 6(2), Pp. 64-69.
• Anu Sharma, Ali T. Al-khwaldeh and Aarti Singh (2016). ABSEP3S- An Agent Based Security Engine for Privacy Preserving in Personalized Search, International Journal of Computing Academic Research (IJCAR), 5(3), 170-176.
• Sharma, Pradeep, Tiwari, Ratan, Saharan, M.S., Sharma, Indu, Kumar, Jitender, Mishra, Shefali, Muthusamy, Senthilkumar K., Gupta, R.K., Jaiswal, Sarika, Iquebal, Mir Asif, Angadi, U.B., Kumar, Neeraj, Fatma, Samar, Rai, Anil, Kumar, Dinesh (2016) Draft Genome Sequence of the Karnal Bunt fungus, Tilletia indica Mitra: Two monosporidial lines (PSWKBGH-1 and 2). Genome Announcement 4(5):e00928-16. doi:10.1128/genomeA.00928-16.
• Kaur, Sukhdeep, Iquebal, M.A., Jaiswal, Sarika, Tandon, Gitanjali, Sundaram, R.M., Gautam, R.K., Suresh, K.P., Rai, Anil and Kumar Dinesh (2016). A meta-analysis of potential candidate genes associated with salinity stress tolerance in rice. Agrigene 1, 126-134.
• Shukla, Shantanu Shukla, Iquebal, MA, Jaiswal, Sarika, Angadi, UB, Fatma, Samar, Kumar, Neeraj, Jasrotia, Rahul S, Fatima, Yasmin, Rai, Anil, Kumar, Dinesh (2016) The Onion Genomic Resource: A Genomics and Bioinformatics driven resource for onion breeding. Plant Gene, 8: 9-15.
• Kumar, S., Ambreen, H., Variath, M.T., Rao, A.R., Agarwal, M., Kumar, A., Goel, S. and Jagannath, A.(2016). Utilization of molecular, phenotypic, and geographical diversity to develop compact composite core collection in the oilseed crop, safflower (Carthamus tinctorius L.) through maximization strategy. Frontiers in Plant Science, 7:1554, DOI:10.3389/fpls.2016.01554.
• Angadi, U. B., Anandan, S., Gowda, N. K. S., Rajendran, D., Devi, L., Elangovan, A. V. and Jash, S. (2016) Feed Assist-An Expert System on Balanced Feeding for Dairy Animals, AGRIS on-line Papers in Economics and Informatics, 8(3), 3 – 12.
• Shinde, M.P., Upadhyay, A., Sarika, Iquebal, M.A. and Upadhyay, A. K. (2016). Identification, characterization and expression analysis of ERF transcription factor VviERF073 and standardization of stable reference genes under salt stress in grape. Vitis-Journal of Grapevine Research, 55, 165-171.
• Ngaki MN, Wang B, Sahu BB, Srivastava SK, Farooqi MS, Kambakam S, etal. (2016) Tanscriptomic Study of the Soybean-Fusarium virguliforme Interaction Revealed a Novel Ankyrin-Repeat Containing Defense Gene, Expression of Whose during Infection Led to Enhanced Resistance to the Fungal Pathogen in Transgenic Soybean Plants. PLoS ONE 11(10): e0163106. doi:10.1371/journal.pone.0163106
• Aarti Singh, Anu Sharma (2016). An Approach for Personalized Web Information Retrieval using Modified PageRank Method, Proceedings of the International Conference on Advances in Information Communication Technology & Computing, Article No. 102, ACM.
• Iquebal, M.A., Prajneshu, Sarika (2016). Application of data reduction technique in agriculture: A functional approach. International Journal of Agricultural and Statistical Sciences, 12(S1), 209-213.

• Das S, Meher PK, Rai A, Bhar LM, Mandal BN (2017) Statistical Approaches for Gene Selection, Hub Gene Identification and Module Interaction in Gene Co-Expression Network Analysis: An Application to Aluminum Stress in Soybean (Glycine max L.). PLoS ONE 12(1): e0169605. doi:10.1371/journal.pone.0169605.

• Singh, Nagendra K, Mahato, Ajay K,Jayaswal, Pawan K, Singh, Akshay, Singh, Sangeeta, Singh, Nisha, Rai, Vandna, Amitha Mithra S V, Gaikwad, Kishor, Sharma, Nimisha, Lal, Shiv, Srivastava, Manish, Praksh, Jai, Kalidindi, Usha, Singh, Sanjay K, Singh, Anand K, Khan, Kasim, Mishra, Rupesh K, Rajan, Shailendra, Bajpai, Anju, Sandhya, BS, Nischita, Puttaraju, Ravishankar, KV, Dinesh, MR, Kumar, Neeraj, Jaiswal, Jaiswal, Sarika, Iquebal, Mir A, Kumar, Dinesh, Rai, Anil and Sharma, Tilak R (2016). Origin, Diversity and Genome Sequence of Mango (Mangifera indica L.). Indian Journal of History of Science, 51.2.2 (2016) 355-368].
• Choudhary, R.K., Rao A. R., Wahi, S.D. and Misra, A.K. (2016). Detection of biennial rhythm and estimation of repeatability in mango (Mangifera indica L.). Indian Journal of Genetics and Plant Breeding. 76(1), 88-97.
• Singh, Binay K., Mishra, Dwijesh C., Yadav, Sushma, Ambawat, Supriya, Vaidya, Era, Tribhuvan, Kishor U., Kumar, Arun, Kumar, Sujith, Kumar, Sanjeev, Chaturvedi, K. K., Rani, Reema, Yadav, Prashant, Rai, Anil, Rai, P. K., Singh, V. V. and Singh, Dhiraj. (2016). Identification, characterization, validation and cross-species amplification of genic-SSRs in Indian Mustard (Brassica juncea). Journal of Plant Biochemistry and Biotechnology. PP. 1-11.
• Mallikarjuna, M.G., Nepolean, T., Mittal, S., Hossain, F., Bhat, J.S., Manjaiah, K.M., Marla, S.S., Mithra, A.C., Agrawal, P.K., Rao, A.R. and Gupta, H.S. (2016). In-silico characterization and comparative mapping of yellow stripe like transporters in five grass species. Indian Journal of Agricultural Sciences, 86(5), 621-627.
• Meher, P.K., Sahu, T.K. and Rao, A. R. (2016). Performance evaluation of neural network, support vector machine and random forest for prediction of donor splice sites in rice. Indian Journal of Genetics and Plant Breeding, 76(2), 173-180.
• Arpan Bhowmik, Ramasubramanian V., Anil Rai, Adarsh Kumar and Madan Gopal Kundu (2016). Improved Estimation in Logistic Regression through Quadratic Bootstrap Approach: An Application in Agricultural Ergonomics.Journal of the Indian Society of Agricultural Statistics70(3) 2016 227–235

(2015)

• arti Singh, Anu Sharma, Nilanjan Dey and Amira S. Ashour (2015). Web Recommendation Techniques – Status, Issues and Challenges, Journal of Network Communications and Emerging Technologies (JNCET), Vol. 5(2), pp. 57-65.
• Ankur Biswas, Anil Rai, Tauqueer Ahmad and Prachi Misra Sahoo (2015). Spatial Estimation approach under ranked set sampling from spatial correlated finite population. Int. J. Agricult. Stat. Sci. Vol. 11, No. 2, pp. 551-558, 2015.
• Bijay Kumar Behera, Vishwamitra Singh Baisvar, Kavita Kumari, Ajaya Kumar Rout, Sudip Pakrashi, Prasenjet Paria, A. R. Rao and Anil Rai (2015). The complete mitochondrial genome of the Anabas testudineus (Perciformes, Anabantidae) and its comparison with other related fish species. Mitochondrial DNA, DOI: 10.3109/19401736.2015.1115490.
• Das, Sofia, Bit, Amrita, Patnaik, Siddhi, Sahoo, Lakshman, Meher, Prem, Saha, T., Patel, A., Patel, Namrata, Koringa, Prakash, Joshi, Chitanya, Agarwal, Suyash, Pandey, Manmohan, Srivastava, Shreya, Kushwaha, B., Kumar, Ravindra, Nagpure, Naresh, Iquebal, M.A., Jaiswal, Sarika, Kumar, Dinesh, Jayasankar, P., Jena, J., and Das, Paramananda (2015). Low depth shotgun sequencing resolves complete mitochondrial genome sequence of Labeo rohita. Mitochondrial DNA.
• Grover Monendra, Mishra Dwijesh (2015). Development of computational methods for classification and determination of function in proteins related to abiotic stress in Poaceae. Journal of Applied BioScience Research, 12, 1-3.
• Grover Monendra, Sudeep Kumar, Rajesh Kumar, Mishra Dwijesh (2015). What does it mean to Gain Complete Understanding of Biological Systems (or for that matter universe)? Journal of Applied BioScience Research 12, 4-5.
• Iquebal, MA, Sarika, Angadi, UB, Sablok, Gaurav, Arora, Vasu, Kumar, Sunil, Rai, Anil and Kumar, Dinesh (2015). SBMDb: First whole genome microsatellite DNA marker database of sugar beet for bioenergy and industrial applications. Database: The Journal of Biological Databases and Curation (Oxford Journal). 2015: bav111.
• Kale, SJ, Jha, SK, Jha, GK, Sinha, JP, Lal, SB (2015). Soaking Induced Changes in Chemical Composition, Glycemic Index and Starch Characteristics of Basmati Rice. Rice Science, 2015, 22(4): DOI: 10.1016/S1672-6308(14)60296-1.
• Koltes JE, Kumar D, Kataria RS, Cooper V, Reecy JM (2015) Transcriptional profiling of PRKG2-null growth plate identifies putative down-stream targets of PRKG2. BMC Res Notes. 2015 Apr 30; 8(1):177. doi: 10.1186/s13104-015-1136-6.
• Kumar Devendra and Farooqi Mohammad Samir (2015). On Generalized Order Statistics from Marshall-Olkin Log-Logistic Distribution. Global Journal of Pure and Applied Mathematics. ISSN 0973-1768 Volume 11, Number 5 (2015), pp. 3513-3528.
• Kumar Ranjeet R, Goswami Suneha, Sharma Sushil K, Kala Yugal K, Rai Gyanendra K, Mishra Dwijesh C, Grover Monendra, Singh Gyanendra P, Pathak Himanshu, Rai Anil, Chinnusamy Viswanathan , Rai Raj D (2015). Harnessing Next Generation Sequencing in Climate Change: RNA-Seq Analysis of Heat Stress-Responsive Genes in Wheat (Triticum aestivum L.). Omics: a journal of integrative biology, DOI:10.1089/omi.2015.0097.
• Kushwaha, B., Kumar, R., Agarwal, S., Pandey, M., Nagpure, N.S., Singh, M., Srivastava, S., Joshi, C.G., Das, P., Shah, T.M., Patel, A.B., Patel, N., Koringa, P, Das, S.P., Patnaik, S., Bit, A., Sarika, Iquebal, M.A., Kumar, D. and Jena, J.K. (2014). Assembly and variation analyses of C. batrachus mitogenome retrieved from WGS data and its phylogenetic relationship with other catfishes. Meta Gene, 5, 105-114.
• Nagesh Mandadi, Christopher Hendrickson, Savithri Handanahal, Thippeswamy Rajappa, Nikhita Pai, Saleem Javeed, Abraham Verghese, Anil Rai, Aneesh Pappu, Geetha Nagaraj, Amit Dhingra (2015): Genome sequences of Photorhabdus luminescens strains isolated from entomopathogenic nematodes from southern India. Genomics Data. doi: 10.1016/j.gdata.2015.07.023
• Nigam Deepti, Kadimi Puneet K, Kumar Sanjeev, Mishra Dwijesh C and Rai Anil. (2015). Computational analysis of miRNA-targets Community Network reveals cross talk among different metabolism. Genomics Data. 5, 292-296.
• Pavan K Chaduvula, Jyotika Bhati, Anil Rai, Kishore Gaikwad, Soma S Marla, M Elangovan, Sanjeev Kumar (2015): Insilico expressed sequence tag analysis in identification and characterization of salinity stress responcible genes in Sorghum bicolour, Australian Journal of Crop Sciences, 9(9), 799-806.
• Rudra SG, Jakhar N, Nishad J, Saini N, Sen S, Bhardhwaj R, S Jaiswal , Suneja P, Singh S and Kaur C. (2015). Extrusion Conditions and Antioxidant Properties of Sorghum, Barley and Horse Gram Based Snack. International Journal of Plant Research, 28(2):171.
• Sengupta A, Grover M, Chakraborty A, Saxena S (2015) HEPNet: A Knowledge Base Model of Human Energy Pool Network for Predicting the Energy Availability Status of an Individual. PLoS ONE 10(6): e0127918. doi:10.1371/journal.pone.0127918.
• Tandon, Gitanjali, Sarika, Iquebal, M. A., Kumar, Sunil, Kaur, Sukhdeep, Rai, Anil and Kumar, Dinesh. (2015). Evidence of Salicylic Acid pathway with EDS1 and PAD4 proteins by molecular dynamics simulation for Grape improvement. Journal of Biomolecular Structure and Dynamics. 33 (10), 2180–2191.
• Gupta, S., Rao, A.R., Varadwaj, P., De, S. and Mohapatra, T. (2015). Extrapolation of inter domain communications and substrate binding cavity of Camel HSP70 1A: A molecular modeling and dynamics simulation study. PLoS ONE, 10(8):e0136630. DOI:10.1371/journal.pone.0136630.

• Gupta,S., Jadaun,A., Kumar,H., Raj,U., Varadwaj,P.K. and Rao, A.R. (2015). Exploration of new drug like inhibitors for serine/threonine protein phosphatase 5 of Plasmodium falciparum: A docking and simulation study. Journal of Biomolecular Structure and Dynamics, 33(11), 2421-2441.

• Behera, B.K., Das, P., Maharana, J., Meena, D.K., Sahu, T.K., Rao, A.R., Chatterjee, S., Mohanty, B.P., Sharma, A.P. (2015). Functional Screening and Molecular Characterization of Halophilic and Halotolerant Bacteria by 16S rRNA Gene Sequence Analysis. Proceedings of the National Academy of Sciences, India Section B: Biological Sciences, 85(4), 957-964.
• Sarkar, R.K., Rao, A.R., Meher, P.K., Nepolean, T. and Mohapatra, T. (2015). Evaluation of Random Forest regression for prediction of breeding value from genome-wide SNPs. Journal of Genetics, 94, 187-192.
• Sarkar, R.K., Meher, P.K., Wahi, S.D., Mohapatra, T. and Rao, A.R. (2015). An approach to the development of a core set of germplasm using a mixture of qualitative and quantitative data. Plant Genetic Resources, Characterization and Utilization. 13(2), 96-103.
• Bardhan, S.R., Rao, A.R., Meher, P.K., Marwaha, S. and Wahi, S.D. (2015).Identification of a suitable clustering method and allocation strategy for core set development in salt stress tolerant rice germplasm. Indian Journal of Agricultural Sciences, 85(12), 1560-1564.
• Mishra, S., Behera, T.K., Munshi, A.D., Bharadwaj, C. and Rao, A.R. (2015). Inheritance of gynoecism and genetics of yield and yield contributing traits through generation mean analysis in bitter gourd. Indian Journal of Horticulture, 72 (2), 218-222.
• Das S., Pandey, P., Rai Anil and Mohapatra C. (2015). A computational system biology approach to construct gene regulatory networks for salinity response in rice (Oryza sativa). Indian Journal of Agricultural Sciences 85 (12).
• Sahu T.K., Rao A.K., Meher, P.K., Sahoo B.C., Gupta S., Rai Anil (2015). Computational Prediction of MHC class I epitopes for most common viral diseases in cattle (Bos Taurus). Indian Journal of Biochemistry and Biophysics, 52, 34-44.
• Som, Sukanya, Burman, R. R., Sharma, J. P., Sangeetha, V., Lenin, V. and Iquebal, M. A. (2015) Assessing information need of the stakeholders on good agricultural practices (GAP) for grapes. Indian Journal of Extension Education, 51 (3 & 4), 8-12.
• Som, Sukanya, Burman, R.R., Sharma, J.P., Sangeetha, V., Lenin, V. and Iquebal, M.A. (2015). Designing and validating e-Iearning Module on Good Agricultural Parctyices (GAP) for grapes. Indian Journal of Horticulture, 72(4), 489-493.

(2014)

• Chaturvedi, KK, Kapur, PK, Anand, S., Singh, VB. (2014). Predicting the complexity of code changes using entropy based measures. International Journal of System Assurance Engineering and Management. DOI 10.1007/s13198-014-0226-5. [Springer]
• Gautam, N. K., Iquebal, M. A., Singh, M., Akhtar, J., Khan, Z. and Ram, B. (2014). Genetic diversity analysis for quantitative traits in Lentil (Lens culinaris Medik.) germplasm. Legume Research-An International Journal, 37(2), 133-138. (To appear).
• Kaur C., Pal, R.K., Kar A., Gadi C, Sen S, Kumar P, Chandra R, Sarika and Islam Khan. (2014). Characterization of Antioxidants and Hypoglycemic Potential of Pomegranate Grown in India – A Preliminary Investigation. Journal of Food Biochemistry (Accepted for publication).
• Keshri, Dhananjaya P. Singh, R. Prabha, A. Rai, A. K. Sharma (2014) . Genome subtraction for the identification of potential antimicrobial targets in Xanthomonas oryzae pv. oryzae PXO99A pathogenic to rice, 3 Biotech, 4:91–95, DOI 10.1007/s13205-013-0131-7.
• Grover (2014) Brassinosteroid synthesis as context sensitive language acceptance problem, International journal of Computer Science and Engineering, 6:118-120,
• Meher, P.K., Sahu, T.K., Rao, A.R. and Wahi, S.D. (2014). Application of Gibbs sampling methodology for identification of transcription factor binding sites in MADS box family genes in Arabidopsis thaliana. Ind. J. Genet., 74(1), 73-80.
• S. Patil and U. B. Angadi (2014) Motif Based Clustering Techniques for Classification of Grass Genome Sequences, International Journal of Electronics Communication and Computer Engineering Volume 5, Issue 1, 2278–4209
• Nigam, D., Kumar Sanjeev, Mishra D. C., Rai Anil, Smita Suchi and Saha Arijit (2014) Synergistic regulatory networks mediated bymicroRNAs and transcription factors under drought, heat and salt stresses in Oryza Sativa spp, Gene, 555 (2015) 127-139.
• Chilana Poonam, Bhati Jyotika, Sharma Anu, Mishra D. C., Rai Anil (2014). “Analysis of Codon Usage Pattern and Prediction of Potentially Highly Expressed Genes in Drosophila”, European Journal of Molecular Biology and Biochemistry, 1(4), 144-150.
• Grover Monendra, Mishra Dwijesh, Kumar Rajesh, Trivedi A.K. and Srivastava Sudhir (2014). “Computation, Mathematics or Aesthetic Realism: Revisiting the foundations of modern biology and agriculture”, International Journal of Current Research and Academic Review, Vol 2(8), pg 175-177.
• Sharma, M.S. Farooqi, K.K. Chaturvedi , S.B. Lal, M. Grover, A. Rai and P, Pandey (2014) The Halophile Protein Database, Database, doi: 10.1093/database/bau114
• Grover, D.C. Mishra, R. Kumar, A.K. Trivedi and S. Srivastava (2014) Computation, Mathematics or Aesthetic Realism: Revisiting the foundations of modern biology and agriculture, Int J Curr Res Aca Rev, 2:175-177
• Grover, S. Kumar, R. Kumar and R. Singh (2014) Multi-party Quantum Communication in biological Cells , Intl. J Comp. Sc. Engg., 6:207-208
• Grover and R Kumar (2014) The Importance of Non local Communication with special reference to biological systems , Intl. J Comp. Sc. Engg., 6:217-218
• Grover and R Kumar (2014) The role of Quantum computation in molecular interactions in biological cells , Intl. J Comp. Sc. Engg., 6:219-220
• Grover and R Kumar (2014) Quantum Computation and Intuition in living organisms , Intl. J Comp. Sc. Engg., 6: 209-210
• Lal, S.B. and Varma, S. P. (2014). Identification of Stress Responsible Genomic Sequences using Back Propagation Neural Networks. Manthan. International Research Journal on Scientific Research & Innovation. (In press).
• Samir Farooqi, R K Sanjukta, D C Mishra, D P Singh, Anil Rai, K K Chaturvedi and Naveen Sharma (2014) In silico analysis of synonymous codon usage pattern of Rhizobium etli CFN 42, has been accepted for publication in Proceedings of the National Academy of Sciences, India Section B: Biological Sciences.
• Chaturvedi, KK, Kapur, PK, Anand, S., Singh, VB. (2014). Predicting the complexity of code changes using entropy based measures. International Journal of System Assurance Engineering and Management. 5(2): 155-164. [Springer]
• Behera, B.K., Das, P., Maharana, J., Meena, D.K., Sahu, T.K., Rao, A.R. Chatterjee, S., Mohanty, B.P., Sharma, A.P. (2014). Functional Screening and Molecular Characterization of Halophilic and Halotolerant Bacteria by 16S rRNA Gene Sequence Analysis Proceedings of the National Academy of Sciences, India Section B: Biological Sciences, DOI: 10.1007/s40011-014-0440-6).
• Behera,B.K., Das, P., Maharana, J., Paria, P., Mandal, S., Meena, D., Sharma, A., Jayarajan, R., Dixit, V., Verma, A., Vellarikkal, S., Scaria, V., Sivasubbu, S., Rao, A.R. and Mohapatra, T. (2014). Draft Genome Sequence of the extremely halophilic Bacterium Halomonas salina sp. Strain CIFRI1 isolated from East Coast of India. Genome Announcements, 3(1): e01321-14., DOI:10.1128/genomeA.01321-14, DOI:10.1128/genomeA.00123-15.
• Meher, P.K., Sahu, T.K., Rao, A.R. and Wahi, S.D. (2014). Determination of window size and identification of suitable method for prediction of donor splice sites in rice (Oryza sativa) genome. Journal of Plant Biochemistry and Biotechnology, DOI: 10.1007/s13562-014-0286-2.
• Meher, P.K., Sahu, T.K.,Rao, A.R. and Wahi, S.D. (2014). A statistical approach for 5′ splice site prediction using short sequence motifs and without encoding sequence data. BMC Bioinformatics, 15:362, DOI:10.1186/s12859-014-0362-6.
• Meher, P.K.,Rao, A.R.., Wahi, S.D. and Thelma, B.K. (2014). An approach using random forest methodology for disease risk prediction using imbalanced case-control data in GWAS Current Medicine Research and Practice, 4, 289-294.
• Rao, A.R. Dash, M., Sahu, T.K., Behera, B.K. and Mohapatra, T. (2014). Detection of novel key residues of Mn SOD enzyme and its role in salinity management across species Journal of Genetics Online Resources, 93, e8-e16.
• Rao, A.R. Dash, M., Sahu, T.K., Wahi, S.D., Behera, B.K., Sharma, A.P. and Bhatia, V.K. (2014). Statistical and bio-computational applications in animal sciences . Ind. J. Anim. Sci., 84(5), 475-489.
• Sahu, T.K.,Rao, A.R.., Dora, S., Gupta, S. and Rai, A. (2014). In silico identification of late blight susceptibility genes in Solanum tuberosum . Ind. J. Genet., 74(2), 229-237.
• Sarkar, R.K., Meher, P.K., Wahi, S.D., Mohapatra, T. and Rao, A.R (2014). An approach to the development of a core set of germplasm using a mixture of qualitative and quantitative data. Plant Genetic Resources, Characterization and Utilization; 1-8, DOI:10.1017/S1479262114000732
• Behera, S.K., Paul, A.K., Wahi, S.D., Iquebal, M.A. and Anil Kumar (2014). Estimation of heritability of mastitis disease using moment estimators. International Journal of Agricultural and Statistical Sciences, 10 (S1).
• Manju Mary Paul, Anil Rai and Sanjeev Kumar (2014) Classification of cereal proteins related to abiotic stress based on their physicochemical properties using support vector machine. Current Science, Vol. 107, No. 8, 1283-89.
• Jyotika Bhati, Pavan Kumar Chaduvula, Ruchi Rani, Sanjeev Kumar and Anil Rai (2014) In-silico prediction and functional analysis of salt stress responsive genes in Maize (Zea mays). European Journal of Molecular Biology and Biochemistry, 1(4):151-157.
• Iquebal M. A., Ansari M. S., Sarika, Dixit S. P., Verma N. K., Aggarwal R.A.K. , Jayakumar S., Rai A. and Kumar D. (2014). Locus minimization in breed prediction using artificial neural network approach, Animal Genetics, 1-5, doi: 10.1111/age.12208.

• Ratna Prabha, Dhananjaya P. Singh, Shailendra K. Gupta, Anil Rai (2014): Whole Genome Phylogeny of Prochlorococcus Marinus Group of Cyanobacteria: Genome Alignment and Overlapping Gene Approach. Interdiscip Sci Comput Life Sci (2014) 6: 1-9, DOI: 10.1007/s12539-013-0024-9

• Lal, S.B., Sharma, Anu, Chandra, Hukum and Rai, Anil (2014). Web Based Sample Selection for Survey Data. J. of Ind. Soc. Of Agric. Statist. Vol. 68(1), 101-108.
• Sandip Kumar Sadhu, Ramasubramanian V., Anil Rai and Adarsh Kumar (2014) Decision Tree Based Models for Classification in Agricultural Ergonomics. Journal of the Society of Statistics, Computers and Applications, Volume 12, Nos. 1&2, 2014 (New Series), pp. 21-33.
• Mrinmoy Ray, Ramasubramanian V., Amrender Kumar and Anil Rai (2014). Application of Time Series Intervention Modelling for Modelling and Forecasting Cotton Yield. Journal of the Society of Statistics, Computers and Applications, Volume 12, Nos. 1&2, 2014 (New Series), pp. 61-70.
• Lal, S.B. and Varma, S. P. (2014). Identification of Abiotic Stress related Cereal Proteins based on their Structural Composition using Back Propagation Networks. Journal of Agroecology and Natural Resource Management (JANRM). Vol 1(4). pp270-274. ISSN:2394-0786. Krishi Sanskriti publication.
• Barat, A., Goel, C., Sahoo, P.K. and Rao, A.R. (2014). Development of expressed sequence tags (ESTs) from the brain tissue of snowtrout Schizothorax richardsonii (Gray, 1832) (Family Cyprinidae) and its preliminary annotation. Indian J. Fish., 61(2): 118-128.
• Gautam, NK, Singh, N, Iquebal, MA, Singh, M, Akhtar, J, Khan, Z and Ram, B. (2014). Genetic diversity analysis for quantitative traits in lentil (Lens Culinaris Medik.) germplasm. Legume Research, 37 (2), 139-144.
• Iquebal, MA, Prajneshu, Sarika (2014). Nonlinear support vector regression methodology for modelling and prediction: An application. Journal of the Indian Society of Agricultural Statistics, 68 (3), 369-374.
• Singh, Madan, Burman, R.R., Sharma, J.P., Sangeetha, V. and Iquebal, M.A. (2014). Structural and Functional Mechanism of Mobile Based Agroadvisory Services and Socio-Economic Profile of the Member Farmers. Journal of Community mobilization and Sustainable development, 9(2), 192-199.

(2013)

• Sanjukta RK, Farooqi MS, Sharma N, Rai N, Mishra DC, Rai A, Singh DP, Chaturvedi KK., (2013) Statistical Analysis of codon usage in extremely halophilic bacterium, Salinibacter ruber DSM 13855, Online J Bioinform., 14(1): 15-31.

• Sarika, Arora, Vasu, Iquebal, M.A., Rai, Anil and Kumar, Dinesh (2013). In silico mining of putative microsatellite markers from whole genome sequence of water buffalo (Bubalus bubalis) and development of first BuffSatDB. BMC Genomics. 14, 43 (19 January, 2013).
• Sarika, Arora, Vasu, Iquebal, M.A., Rai, Anil, and Kumar, Dinesh (2013). PIPEMicroDB: Microsatellite database and primer generation tool for pigeonpea genome. Database: The Journal of Biological Databases and Curation. Vol. 2013, Article ID bas054, doi:10.1093/database/bas054.
• Bajetha, Garima, Bhati, Jyotika, Sarika, Iquebal, M. A., Rai, Anil, Arora, Vasu and Kumar, Dinesh (2013). Analysis and functional annotation of expressed sequence tags of Water Buffalo, Animal Biotechnology. 24 (1), 25-30.
• Bhushan, Gunjan, Mishra, V.K., Iquebal, M.A. and Singh, Y.P. (2013) Effect of genotypes, reproductive developmental stages, and environments on glucosinolates content in rapeseed mustard. Asian Journal of Plant Science and Research, 3(1), 75-82.
• Singh, Braj Bhusan Singh, Supradip Saha, Balraj Singh, Pritam Kalia, Seema Jaggi and Sarika. (2013). Functional quality and antioxidant composition of selected tomato (Solanum lycopersicon L) cultivars grown in northern India. LWT – Food Science and Technology. 50, 139-145.
• Poonam Chilana, Anu Sharma, Vasu Arora, Jyotika Bhati and Anil Rai: Computational Identification and Characterization of Putative miRNAs in Heliothis virescens has been accepted for publication in journal Bioinformation.
• Zhi-LiangHu, Dinesh Kumar & James Reecy (2013) CorrDB: A livestock animal genetic/phenotypic trait correlation database.https://pag.confex.com/pag/xxi/webprogram/Paper6340.html
• Avantika Singh, Garima Vats, Nidhi Chandra, Monendra Grover* (2013) Sumoylation may play an important role in modification of large number of proteins associated with heat stress in plants. Proceedings of the National Academy of Sciences, India Section B: Biological Sciences (NAAS rating:6), doi:10.1007/s40011-013-0249-8
• Charanjit Kaur, Shweta Nagal, Jyoti Nishad, Ravinder Kumar and Sarika (2013). Evaluating eggplant (Solanum melongena L) genotypes for bioactive properties: A chemometric approach. Food Research International (In press; Available online at http://authors.elsevier.com/sd/article/S096399691300536X)
• Chauhan J S, Singh K H, Mishra D C (2013) “AMMI and bi-plot analyses to identify stable genotypes of Indian Mustard (Brassica juncea L.) for oil and seed meal quality characters”, SABRAO Journal of Breeding and Genetics, 45 (2) 195-202, 2.
• Eldho Varghese, Seema Jaggi and Sarika (2013). Response surface model with neighbor effects and correlated observations. Model Assisted Statistics and Applications, 8(1): 41-49.
• Farooqi Mohammad Samir, Sanjukta Raj kumari, Sharma Naveen, Rai Anil, Mishra Dwijesh Chandra, Singh Dhananjaya P, Chaturvedi K K, Kumar Anil and Panwar Sanjeev (2013) “Statistical and computational methods for detection of synonymous codon usage patterns and gene expression” , International Journal of Agricultural and Statistical Sciences, 9 (1), 303-310.
• Farooqi, M.S., Sanjukta, R.K., Sharma, N., Rai, A., Mishra, D.C., Singh, D.P., Chaturvedi, K.K., Kumar, A., Panwar, S., (2013). Statistical and computational methods for detection of synonymous codon usage patterns and gene expression. International Journal of Agricultural and Statistical Sciences, 9(1): 303-310.
• Iquebal MA, Sarika, Dhanda, SK, Arora V, Dixit, SP, Raghava GPS, Rai A and Kumar D (2013). Development of a model webserver for breed identification using microsatellite DNA marker. BMC Genetics 2013, 14:118. (http://www.biomedcentral.com/1471-2156/14/118/abstract).
• Iquebal MA, Sarika, Arora Vasu, Verma Nidhi, Rai Anil and Kumar Dinesh (2013). First whole genome based microsatellite DNA marker database of tomato for mapping and variety identification. BMC Plant Biology 2013, 13:197. (http://www.biomedcentral.com/1471-2229/13/197/abstract).
• Kumar A., Mishra D. C., Rai A., Sharma M.K. and Gajula M.N.V.P. (2013) “In Silico Analysis of Protein-Protein Interaction Between Resistance and Virulance Protein during Leaf Rust Disease in Wheat (Triticum aestivum L.)”, World Research Journal of Peptide and Protein, 2 (1), 52-58.
• Kumar, V., Singh, K.H., Chaturvedi, K.K., Nanjundan, J. (2013). Design and implementation of web-based database of rapeseed-mustard germplasm using Linux – Apache – MySQL – PHP (LAMP) technology. African Journal of Agricultural Research, 8(22): 2733-2743.
• Kumar, M., Ahmad, T., Rai, A. and Sahoo, P.M. (2013) Methodology for Construction of Composite Index. International Journal of Agricultural and Statistical Sciences, 9(2), 639-647.
• Lal, S.B., Pandey, P.K., Rai, P.K., Rai,A., Sharma, A., Chaturvedi, K.K. (2013). Design and Development of Portal for Biological Database in Agriculture. Bioinformation, 9(11): 588-598.
• Grover, R.Grover, R.Singh, R.Kumar and S.Kumar (2013) Quantum combinatorial model of gene expression. Bioinformation 9(3):141-144
• Samir Farooqi, R. K. Sanjukta, D. C. Mishra, , D. P. Singh, Anil Rai, K K Chaturvedi, Anil Kumar, Sanjeev Panwar and Naveen Sharma, “Statistical and computational methods for detection of synonymous codon usage patterns and gene expression”, International Journal of Agricultural and Statistical Sciences, Vol.9, No. 1, pp. 303-310, 2013.
• Sarika, Iquebal, M.A., Rai, Anil and Anshika (2013). Support vector machine for prediction of antimicrobial peptides in legumes. International Journal of Agricultural & Statistical Sciences, 9 (2), 717-728.
• Sarika, Jaggi Seema and Sharma VK (2013). First order rotatable designs incorporating neighbor effects. ARS Combinatoria. 112, 145-159.
• Satyavathi, C. T., Sapna, T., Bharadwaj, C., Rao, A.R., Bhat, J and Singh, S.P. (2013). Genetic Diversity Analysis in a Novel Set of Restorer Lines of Pearl Millet [Pennisetum glaucum (L.) R. Br] Using SSR Markers. Vegetos, 26 (1), 72-82.
• Sharma, Anu, Lal, S. B., Mishra, D. C., Srivastava, Sudhir and Rai, Anil (2013). A web Based Software for Synonymous Codon Usage Indices. International Journal of Information and Computation Technology, Vol. 3 No. 3, 147-152.
• Singh, V.B., Chaturvedi, K.K. (2013). Bug Prediction using Entropy Based Measures. International Journal of Knowledge Engineering and Data Mining, 2(4):266-291. [Inderscience].
• Singh, VB, Chaturvedi, KK, Khatri, S.K., Kumar, V. (2013). Bug prediction modeling using complexity of code changes. International Journal of System Assurance Engineering and Management. DOI 10.1007/s13198-014-0242-5. [Springer]

• Sundeep Kumar , Prerna Kumari , Uttam Kumar , Monendra Grover, Amit Kumar Singh , Rakesh Singh , R. S. Sengar (2013) Molecular approaches for designing heat tolerant wheat. J. Plant Biochem. Biotechnology, NAAS rating :6.41, DOI 10.1007/s13562-013-0229-3

• Anu Sharma, Amerender Kumar Jha, S. B Lal and Alka Arora (2013). Web Based Software for Back Propagation Neural Networks with Weight Decay Algorithm. Proceedings of the 7th National Conference; INDIACom-2013, Computing For Nation Development, Bharati Vidyapeeth’s Institute of Computer Applications and Management (BVICAM), New Delhi, Page 241-246.
• B. Lal and Anu Sharma (2013). Web Based Sample Selection for Survey Data. Proceedings of the 7th National Conference; INDIACom-2013, Computing For Nation Development, Bharati Vidyapeeth’s Institute of Computer Applications and Management (BVICAM), New Delhi, Page 251-244.
• Jyotika Bhati, Pavan K Chaduvula, Sanjeev Kumar and Anil Rai: Phylogenetic analysis and secondary structure prediction for drought tolerant Capbinding proteins of plant species. Indian Journal of Agricultural Sciences, 83 (1): 21–5, 2013
• Chaturvedi, KK, Singh, VB and Khatri, SK (2013). “A study of bug prediction approaches using Mozilla project”. In Proceedings of International Conference on Reliability, Infocom Technologies and Optimization (ICRITO 2013) during 29-31 Jan. 2013 held at Amity University, Noida, UP (India). Pg. 350-357. ISBN: 978-93-81583-85-2.
• Sharma, Meera, Chaturvedi, KK and Singh, VB, (2013). “Severity Prediction of Bug Reports in Cross Project Context”. In Proceedings of International Conference on Reliability, Infocom Technologies and Optimization (ICRITO 2013) during 29-31 Jan. 2013 held at Amity University, Noida, UP (India). pg. 96-102. ISBN: 978-93-81583-85-2.
• Biswas, A., Ahmad, T. and Rai, A. (2013). Variance estimation using Jackknife method in ranked set sampling under finite population framework. Journal of Indian Society of Agricultural Statistics,67(3), 345-353.
• Yogita Gharde, Anil Rai and Seema Jaggi (2013) Bayesian Prediction in Spatial Small Area Models. Journal of Indian Society of Agricultural Statistics, 67(3), 355-362.
• Goyal, P., Chattopadhyay, C., Mathur, A.P., Kumar, A., Meena, P.D., Datta, S. and Iquebal, M.A. (2013). Pathogenic and molecular variability among different oilseed Brassica isolates of Alternaria brassicae from India. Annals of Plant Protection Sciences, 21(2): 349-359.
• Goyal, P., Kumar, A., Chahar, M., Iquebal, M.A., Datta, S. and Chattopadhyay, C. (2013). Pathogenic and genetic variability among different oilseed Brassica isolates of Sclerotinia sclerotiorum from India and UK. Annals of Plant Protection Sciences, 21(2): 377-386.
• Iquebal MA, Ghosh H and Prajneshu (2013). Fitting of SETAR Three-regime nonlinear time series model to Indian lac production data through genetic algorithm. Indian Journal of Agricultural Sciences, 83 (12), 130-132.
• Iquebal, M A and Sarika (2013). Nonlinear growth models for describing country’s Lentil (Lens culinaris M.) production. Journal of Food Legumes, 26 (1&2), 79-82.
• Iquebal, M.A, Sarika, Arora, Vasu, Rai, Anil, and Kumar, Dinesh.(2013). In silico mining of microsatellite markers from goat whole genome and development of GOSATDB. (Accepted for publication in Indian Journal of Animal Research).
• Lal, S. B., Pandey, P. K., Rai, P.K., Rai, Anil, Sharma, Anu and Chaturvedi, K.K. (2013). Design and Development of Portal for Biological Database in Agriculture. Bioinformation. Vol. 9 Issue: 11 ISSN 0973-2063 (online) 0973-8894 (print).
• Patil, J.P., Sarangi, A., Singh, D.K., Chakraborty, D, Rao, A.R. and Dahiya, S. (2013). Rainfall trend analysis: A case study of Pune district in western Maharashtra region. Journal of Soil and Water Conservation, 12(1), 35-43.
• G T Patle, D K Singh, A SarangiI, Anil Rai, Manoj Khanna and R N Sahoo (2013).Temporal variability of climatic parameters and potential evapotranspiration. Indian Journal of Agricultural Science, 83 (5): 518–24, May 2013
• Priyamedha, Singh V V, Chauhan J S, Meena M L, Mishra D C (2013) “Correlation and path coefficient analysis for yield and yield components in early generation lines of Indian Mustard (Brassica juncea L.)”, Current Advances in Agricultural Sciences, 5(1): 37-40.
• Anil Rai and Praveen Krishna (2013). Ranked Set Sampling from Finite Population under Randomized Framework. Journal of Indian Society of Agricultural Statistics, 67(3), 363-369.
• Rai Anil, Sanjukta R.K., Rai Niyati, Farooqi Md. Samir,, Sharma Naveen, Mishra Dwijesh C. and Singh Dhananjay P. (2013) “Expression Analysis of Genes Responsible for Amino Acid Biosynthesis in halophilic bacterium Salinibacter ruber”. Indian Journal of Biochemistry and Biophysics, Vol 50, pp 177-185.
• Ranjit Kumar Paul, Sanjeev Panwar, Susheel Kumar Sarkar, Anil Kumar, K.N. Singh, Samir Farooqi and Vipin Kumar Choudhary: Modelling and Forecasting of Meat Exports from India, Agricultural Economics Research Review, Vol. 26 (No.2) July-December 2013 pp 249-255
• RK Sanjukta, Md. Samir Farooqi, Niyati Rai, Anil Rai, Naveen Sharma, Dwijesh C Mishra and Dhananjaya P Singh “ Expression analysis of genes responsible for amino acid biosynthesis in extremely halophilic bacterium, Salinibacter ruber”, Indian Journal of Biochemistry and Biophysics Vol 50, June. 2013, pp. 177-185
• Shachi Gahoi, Arya L., Rai Anil and Marla SS (2013): DPPrimer – A Degenerate PCR Primer Design Tool. Bioinformation, 9(18), 937-940
• Sharma, Anu, Rai, Anil, and Lal, S. B. (2013). Workflow Management Systems for Gene Sequence Analysis and Evolutionary Studies – A Review. Bioinformation. Vol. 9 Issue: 13. ISSN 0973-2063 (online) 0973-8894 (print).
• Srivastava, Sudhir, Varghese, Cini, Jaggi, Seema and Varghese, Eldho (2013). Diallel cross designs for test versus control comparisons. The Indian Journal of Genetics and Plant Breeding, 73(2), 186-193.
• Basak, P, Chandra, H, Sud, UC and Lal, SB (2013). Prediction of Population Total for Skewed Variable under a Log Transform Model. International Journal of Agricultural and Statistical Sciences, 9, S1, 143-154

(2012)

• Sharma, Anu and Lal, S. B. (2012). SSDA.Analysis – A Class Library for Analysis of Sample Survey Data. International Journal of Modern Engineering Research, Vol.2, Issue.1, Jan-Feb 2012 pp-242-246, ISSN: 2249-6645
• Kumar, Shiv Kant, Lal, I. B. and Lal, S. B. (2012). Fixed – charge Bi-criterion Transportation Problem. International Journal Of Computer Application. Issue2, Volume 1, ISSN: 2250-1797
• Lal, S.B. and Sharma, Anu (2012). SSDA – A Windows Based Software for Survey Data Analysis. International Journal of Physical and Social Sciences (IJPSS). Volume 2, Issue 4. PP(381-389) ISSN: 2249-5894.
• Poonam Chilana, Anu Sharma and Anil Rai (2012), Insect Genomic Resources: Status, Availability and Future, Current Science, Vol. 102, No. 4, 571-580.
• Ratna Prabha, Dhananjaya P. Singh, Shailendra K. Gupta, Samir Farooqi and Anil Rai, “Synonymous codon usage in Thermosynechococcus elongatus (cyanobacteria) (2012) identifies the factors shaping codon usage variation”, Bioinformation, 8(13): 622-628.
• Rajkumari Sanjukta, Mohammad Samir Farooqi, Naveen Sharma, Anil Rai, Dwijesh Chandra Mishra, and Dhananjaya P Singh “Trends in the codon usage patterns of Chromohalobacter salexigens genes” (2012). Bioinformation. 8(22): 1087-1095.
• Sandhu SK, Oberoi HS Dhaliwal SS, Babbar N, Kaur U, Nanda, DK; Kumar D (2012) Ethanol production from Kinnow mandarin (Citrus reticulata) peels via simultaneous saccharification and fermentation using crude enzyme produced by Aspergillus oryzae and the thermotolerant Pichia kudriavzevii strain. Annals of Microbiology (Springer) 62:2, 656-666 (June 2012 issue) [A139] NAAS Score/Thompson IF 7.1/0.689.
• Jain A, Gour DS, Bisen PS, Dubey PP, Sharma DK, Tiwari RP, Gupta N, Kumar D (2012) Allele mining in β-lactoglobulin gene of Capra hircus A Journal of Biotechnology(2012) 11:50, 11057-11064 (June 2012 issue) [A053] NAAS Score/Thompson IF 6.0/0.56.
• Sarika, Iquebal M.A., Rai A. (2012). Biotic stress resistance in agriculture through antimicrobial peptides. Peptides, 36, 322-330.
• Sarika, Iquebal, M. A. and Rai, Anil (2012). In silico analysis and homology model of legume antioxidant proteins. Online Journal of Bioinformatics, 13(1), 120-129.
• Choudhary, A. K. and Iquebal, M. A. and Nadarajan, N. (2012). Protogyny is an attractive option over emasculation for hybridization in pigeonpea. SABRAO Journal of Breeding and Genetics, 44(1), 138-148.
• Singh N, Sahu TK, Rao AR, Mohapatra T (2012). shRNAPred (version 1.0): An open source and standalone software for short hairpin RNA (shRNA) prediction. Bioinformation, 8 (13), 629-633.
• Sahu TK, Rao AR, Vasisht S, Singh N, Singh UP (2012). Computational Approaches, Databases and Tools for in silico Motif Discovery. Interdisciplinary Sciences: Computational Life Sciences, 4 (4), 239-255 (DOI: 10.1007/s12539-012-0141-x).
• Dhananjaya P. Singh,Ratna Prabha, Rai Anil and Dilip K. Arora ( 2012). Bioinformatics-Assisted Microbiological Research: Tasks, Developments and Upcoming Challenges. American Journal of Bioinformatics 1 (1): 10-19, 2012
• Gharde, Yogita. Rai Anil, Chandra Hukum (2012) Hierarchical Bayes Small area approach for spatial data, Jr. Ind. Soc. Ag. Stat. , 66(2), 259-268.
• Kumar Manoj, Ahmad Taqueer, Rai Anil, Sahoo, P.M. (2012). Sensitivity analysis of various indicators of composite index, Jr. Ind. Soc. Ag. Stat. , 66(2), 3335-342.

• Chaturvedi, K.K., Singh, V.B. (2012). An empirical comparison of machine learning techniques in predicting the bug severity of open and closed source projects. International Journal of Open Source Software and Processes, 4(2): 32-59. [IGI-Global]

• Dahiya, Shashi, Chaturvedi, K.K, Jaggi, Seema, Bharadwaj, Anshu, Varghese, Cini. (2012). A Digital Education Initiative in Agriculture. Journal of Farming Systems Research & Development. 18(2):175-179
• Nishikant Taksande, Anu Sharma, Cini Varghese, Seema Jaggi and S. B. Lal (2012). Web-enabled software for Generation and Analysis of Partial Diallel Crosses, Journal of Indian Society of Agricultural Statistics, 66(2), 343-350.
• Singh Nripendra V., Singh Sanjay K., Singh Anand K.,Meshram Deodas T.,Surosh Sachin S. and Mishra Dwijesh C. (2012), “Arbuscular Mycorrhizal Fungi (AMF) induced hardening of micropropagated pomegranate (Punica granatum L.) plantlets”, Scientia Horticulturae, Vol. 136, pg. 122-127.
• Islam Shahnawazul, Kundu Sushila, Shoran Jag, Sabir Naved, Sharma Kirti, Farooqi Samir, Singh Randhir, Agarwal Hari Om, Chaturvedi K.K., Sharma R.K. and Sharma A.K. “Selection of wheat (Triticum aestivum) variety through expert system” Indian Journal of Agricultural Sciences 82 (1): 43–7, January 2012.
• Dash, S., Wahi, S.D., Rao, A.R. (2012). Classification of maize genotypes by artificial neural network based method: Self Organizing Feature Map, Indian Journal of Agricultural Sciences, 82(2), 162-163.
• Sanjeev Panwar, Anil Kumar, K.N. Singh, Md. Samir Farooqi, and Abhishek Rathore (2012), “Nonlinear regression techniques for analysis of onion (Allium cepa) production in India” Indian Journal of Agricultural Sciences 82 (12): 1051-4, December.
• Dahiya, Shashi, Jaggi, Seema, Chaturvedi, K.K., Bhardwaj, Anshu, Goyal, R.C. and Varghese, Cini. (2012). An eLearning System for Agricultural Education”. Indian Research Journal of Extension and Education. Volume 12(3). pg. 132-135, Sept. 2012. (NAAS 3.5).
• Shrivastava, A., Babbar, A., Prakash, V., Tripathi, N and Iquebal, M. A. (2012). Genetic and molecular diversity analysis for improvement of chickpea (Cicer arietinum L.) genotypes grown under rice fallow. Journal of Food Legume, 25(2), 147-150.
• Iquebal, M. A., Ghosh, Himadri and Prajneshu (2012). Genetic algorithm optimization technique for linear regression models with heteroscedastic errors. Indian Journal of Agricultural Sciences, 82(5), 422-425.
• Sarkar, R.K., Rao, A.R., Wahi, S.D. and Bhat, K.V. (2012). Performance of clustering procedures for grouping germplasms based on mixture data with missing observations. Indian Journal of Agricultural Sciences, 82(12), 1055-1058.
• Intelligent Systems Design and Applications during 27-29 Nov. 2012 at CUSAT, Kochi (India). ISBN: 978-1-4673-5118-8 2012 IEEE Explore. pg. 746-751.
• Sharma, Meera, Bedi, Punam Chaturvedi, K.K. and Singh, VB, (2012). “Predicting the Priority of a Reported Bug using Machine Learning Techniques and Cross Project Validation” in Proceedings of 12th International Conference on Intelligent Systems Design and Applications during 27-29 Nov. 2012 at CUSAT, Kochi (India). ISBN:978-1-4673-5118-8 2012 IEEE Explore. pg. 539-545.

(2011)

• Sahu TK, Rao AR, Singh A, Behera BK, Mohapatra T. (2011). In silico identification of residues for anoxia tolerance across species. Online J. Bioinformatics, 12(1), 175-197.

• Sarkar, R.K., Rao, A.R., Wahi,S.D. and Bhat, K.V. (2011). A comparative performance of clustering procedures for mixture of qualitative and quantitative data – An application to black gram. Plant Genetic Resources – Characterization and Utilization, 9(4), 523–527.

• Farooqi Mohammad Samir, Arora Alka, Dahiya Shashi, Rai Anil and Singh Balbir (2011). PERMISnet-II: Personnel Management Information System Network – II for Indian Council of Agricultural Research, Journal of the Indian Society of Agricultural Statistics, Vol.65(1), 105-113.
• Rai Anil, Bhati Jyotika and Lal S.B. (2011) : Analytical tools and resources in Bioinformatics Eds.AJIT KUMAR ROY, New India Publishing Agency, New Delhi.
• Anil Rai, S B Lal, Anu Sharma, Samir Farooqi, Hukum Chandra, A R Rao, Seema Jaggi (2011), Leaflet Brochure on National Agricultural Bioinformatics Grid, IASRI Publication.
• Wahi, S.D. and Rao, A.R. (2011). Some investigations on sampling variance of genetic correlation. The IUP Journal of Genetics & Evolution, 4(2), 27-44.
• Rai Anil, Bhati Jyotika and Lal S.B. (2011) : Analytical tools and resources in Bioinformatics Eds.AJIT KUMAR ROY, New India Publishing Agency, New Delhi.

(2010)

• Meher P.K., Rao, A.R., Wahi, S.D. and Jaggi, Namita (2010). Detection of Multivariate Outliers in Breeding Data. International Journal of Statistics and System, 5(4), 527-535.

• Shukla, Rajesh, Rai Anil and Nitasha Monga (2010) India Protection Index: An Objective Measurement of the Economic and Social Well-being of the Indian Population. Margin-The Journal of Applied Economic Research 4 (3), 339–36.

• Rao, AR, Choudhary, SK, Wahi, SD and Prabhakaran, V.T. (2010). An index for simultaneous selection of genotypes for high yield and stability under incomplete genotype x environment data. Ind. J. Genet., 70(1), 80-84.
• Ahmad, T., Rai, A. and Singh, R. (2010). Statistical evaluation of development of village’s potential for agro forestry using GIS. Adv. Appl. Res., 2(2), 157-163.
• Rai Anil, Chaturvedi K.K, Bhatia V.K. and Ramasubramanian V. (2010): Impact Assessment of Information and Communication Technology on Food Grain Production in India . Evaluation and Impact Assessment of Technologies and Developmental Activities in Agriculture, Fisheries and Its Allied Field Eds.AJIT KUMAR ROY, New India Publishing Agency, New Delhi.